Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
RaraP11416 Pcgf5-211ENSMUST00000225920 6443 ntBASIC14.26□□□□□ -0.13
RaraP11416 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Gm9025-201ENSMUST00000122415 1575 ntBASIC14.26□□□□□ -0.13
RaraP11416 AC113060.1-201ENSMUST00000225689 1573 ntBASIC14.26□□□□□ -0.13
RaraP11416 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RaraP11416 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RaraP11416 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RaraP11416 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RaraP11416 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RaraP11416 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RaraP11416 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RaraP11416 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
RaraP11416 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
RaraP11416 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC14.25□□□□□ -0.13
RaraP11416 Gm27196-201ENSMUST00000184787 2582 ntBASIC14.25□□□□□ -0.13
RaraP11416 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC14.25□□□□□ -0.13
RaraP11416 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC14.25□□□□□ -0.13
RaraP11416 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC14.25□□□□□ -0.13
RaraP11416 Gm42612-201ENSMUST00000197986 623 ntBASIC14.25□□□□□ -0.13
RaraP11416 Gm43170-201ENSMUST00000199827 612 ntBASIC14.25□□□□□ -0.13
RaraP11416 Gm42550-201ENSMUST00000201553 960 ntBASIC14.25□□□□□ -0.13
RaraP11416 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RaraP11416 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC14.25□□□□□ -0.13
RaraP11416 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RaraP11416 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RaraP11416 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
RaraP11416 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
RaraP11416 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC14.25□□□□□ -0.13
RaraP11416 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RaraP11416 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RaraP11416 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
RaraP11416 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC14.25□□□□□ -0.13
RaraP11416 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RaraP11416 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RaraP11416 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RaraP11416 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Rnf17-202ENSMUST00000223627 2077 ntBASIC14.24□□□□□ -0.13
RaraP11416 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC14.24□□□□□ -0.13
RaraP11416 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
RaraP11416 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
RaraP11416 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Gm42748-201ENSMUST00000199354 2341 ntBASIC14.24□□□□□ -0.13
RaraP11416 AC125108.1-201ENSMUST00000218986 2330 ntBASIC14.24□□□□□ -0.13
RaraP11416 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
RaraP11416 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
RaraP11416 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
RaraP11416 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
RaraP11416 Gm13689-201ENSMUST00000119360 685 ntBASIC14.24□□□□□ -0.13
RaraP11416 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
RaraP11416 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
RaraP11416 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC14.24□□□□□ -0.13
RaraP11416 Gm44872-201ENSMUST00000207864 420 ntBASIC14.24□□□□□ -0.13
RaraP11416 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
RaraP11416 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
RaraP11416 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC14.24□□□□□ -0.13
RaraP11416 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
RaraP11416 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC14.24□□□□□ -0.13
RaraP11416 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RaraP11416 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RaraP11416 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RaraP11416 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
RaraP11416 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC14.23□□□□□ -0.13
RaraP11416 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RaraP11416 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
RaraP11416 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
RaraP11416 Gm44414-201ENSMUST00000203660 2109 ntBASIC14.23□□□□□ -0.13
RaraP11416 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
RaraP11416 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms