Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Col1a1P11087 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Col1a1P11087 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col1a1P11087 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC15.22■□□□□ 0.03
Col1a1P11087 Gm12626-201ENSMUST00000117339 1983 ntBASIC15.22■□□□□ 0.03
Col1a1P11087 Gm12623-201ENSMUST00000119849 1983 ntBASIC15.22■□□□□ 0.03
Col1a1P11087 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC15.22■□□□□ 0.03
Col1a1P11087 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC15.22■□□□□ 0.03
Col1a1P11087 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC15.22■□□□□ 0.03
Col1a1P11087 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC15.22■□□□□ 0.03
Col1a1P11087 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Gm7003-201ENSMUST00000195089 312 ntBASIC15.22■□□□□ 0.03
Col1a1P11087 Gm5051-201ENSMUST00000204085 485 ntBASIC15.22■□□□□ 0.03
Col1a1P11087 Gm45118-201ENSMUST00000208928 825 ntBASIC15.22■□□□□ 0.03
Col1a1P11087 Gm45598-202ENSMUST00000210719 986 ntBASIC15.22■□□□□ 0.03
Col1a1P11087 Gm7848-201ENSMUST00000210739 718 ntBASIC15.22■□□□□ 0.03
Col1a1P11087 Aprt-ps-201ENSMUST00000212311 505 ntBASIC15.22■□□□□ 0.03
Col1a1P11087 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC15.22■□□□□ 0.03
Col1a1P11087 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC15.22■□□□□ 0.03
Col1a1P11087 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Col1a1P11087 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Col1a1P11087 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 AC154725.1-201ENSMUST00000224826 1961 ntBASIC15.22■□□□□ 0.03
Col1a1P11087 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Gm5639-201ENSMUST00000122305 2403 ntBASIC15.22■□□□□ 0.03
Col1a1P11087 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col1a1P11087 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col1a1P11087 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col1a1P11087 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Col1a1P11087 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Col1a1P11087 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC15.21■□□□□ 0.03
Col1a1P11087 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC15.21■□□□□ 0.03
Col1a1P11087 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Col1a1P11087 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC15.21■□□□□ 0.03
Col1a1P11087 Gm19931-201ENSMUST00000198920 368 ntBASIC15.21■□□□□ 0.03
Col1a1P11087 AU022133-201ENSMUST00000200601 873 ntBASIC15.21■□□□□ 0.03
Col1a1P11087 Gm7207-201ENSMUST00000211575 1067 ntBASIC15.21■□□□□ 0.03
Col1a1P11087 AC166344.1-202ENSMUST00000224139 234 ntBASIC15.21■□□□□ 0.03
Col1a1P11087 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Col1a1P11087 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col1a1P11087 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col1a1P11087 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col1a1P11087 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Col1a1P11087 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col1a1P11087 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col1a1P11087 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col1a1P11087 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col1a1P11087 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Col1a1P11087 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC15.21■□□□□ 0.03
Col1a1P11087 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col1a1P11087 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Col1a1P11087 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col1a1P11087 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col1a1P11087 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col1a1P11087 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col1a1P11087 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Col1a1P11087 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC15.21■□□□□ 0.02
Col1a1P11087 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Col1a1P11087 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC15.2■□□□□ 0.02
Col1a1P11087 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC15.2■□□□□ 0.02
Col1a1P11087 Gm44545-201ENSMUST00000208262 746 ntBASIC15.2■□□□□ 0.02
Col1a1P11087 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Col1a1P11087 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC15.2■□□□□ 0.02
Col1a1P11087 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Gm5466-201ENSMUST00000119395 1890 ntBASIC15.2■□□□□ 0.02
Col1a1P11087 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC15.2■□□□□ 0.02
Col1a1P11087 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms