Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Gm37736-201ENSMUST00000193564 2802 ntBASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Gm12906-201ENSMUST00000154610 441 ntBASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Prok2-201ENSMUST00000008273 594 ntTSL 3 BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Mocs2-216ENSMUST00000184672 1447 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Gm13624-201ENSMUST00000120263 462 ntBASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 AA623943-201ENSMUST00000121794 354 ntBASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Gm20703-201ENSMUST00000175668 385 ntTSL 2 BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Mir6407-201ENSMUST00000184510 101 ntBASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col6a3E9PWQ3 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Grk3-204ENSMUST00000197888 1938 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Gm25226-201ENSMUST00000158198 123 ntBASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Gm15524-201ENSMUST00000159874 463 ntTSL 3 BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Gm37197-201ENSMUST00000195607 401 ntBASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Gm44421-201ENSMUST00000205064 1221 ntBASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Zfp445-205ENSMUST00000214626 1220 ntTSL 5 BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Isca2-206ENSMUST00000222449 374 ntTSL 2 BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 AC115122.1-201ENSMUST00000224850 1040 ntBASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Gm8737-201ENSMUST00000122208 642 ntBASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Gm19587-201ENSMUST00000191395 545 ntBASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 AC170997.1-201ENSMUST00000214554 1053 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 AC154361.2-201ENSMUST00000224747 943 ntBASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Ppp2r5c-205ENSMUST00000221715 2367 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col6a3E9PWQ3 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a3E9PWQ3 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Col6a3E9PWQ3 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a3E9PWQ3 Gm15726-201ENSMUST00000144738 509 ntTSL 3 BASIC12.77□□□□□ -0.36
Col6a3E9PWQ3 Gm28651-201ENSMUST00000185335 644 ntTSL 3 BASIC12.77□□□□□ -0.36
Col6a3E9PWQ3 3110009M11Rik-201ENSMUST00000208647 892 ntBASIC12.77□□□□□ -0.36
Col6a3E9PWQ3 Gm45613-201ENSMUST00000210718 443 ntTSL 3 BASIC12.77□□□□□ -0.36
Col6a3E9PWQ3 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC12.77□□□□□ -0.36
Col6a3E9PWQ3 AC130477.1-201ENSMUST00000226982 420 ntBASIC12.77□□□□□ -0.36
Col6a3E9PWQ3 Ebi3-201ENSMUST00000003274 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a3E9PWQ3 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a3E9PWQ3 Defa3-201ENSMUST00000098893 410 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a3E9PWQ3 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a3E9PWQ3 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC12.77□□□□□ -0.36
Col6a3E9PWQ3 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC12.77□□□□□ -0.36
Col6a3E9PWQ3 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a3E9PWQ3 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Col6a3E9PWQ3 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Gm17214-201ENSMUST00000164501 541 ntBASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Gm29410-201ENSMUST00000188383 694 ntBASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Tcf7l2-204ENSMUST00000111649 982 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Gm11952-201ENSMUST00000121172 821 ntBASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Gm12666-201ENSMUST00000123179 764 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Gm11634-201ENSMUST00000154147 755 ntAPPRIS ALT2 TSL 3 BASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC12.77□□□□□ -0.37
Col6a3E9PWQ3 Gm23363-201ENSMUST00000175024 79 ntBASIC12.77□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms