Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm8355-201ENSMUST00000177767 1941 ntBASIC12.89□□□□□ -0.35
Chd3B1AR17 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Gm13350-201ENSMUST00000120519 479 ntBASIC12.89□□□□□ -0.35
Chd3B1AR17 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC12.89□□□□□ -0.35
Chd3B1AR17 Gm16379-201ENSMUST00000161469 348 ntBASIC12.89□□□□□ -0.35
Chd3B1AR17 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC12.89□□□□□ -0.35
Chd3B1AR17 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Chd3B1AR17 Gm8762-201ENSMUST00000193486 339 ntBASIC12.89□□□□□ -0.35
Chd3B1AR17 Gm37259-201ENSMUST00000193903 849 ntBASIC12.89□□□□□ -0.35
Chd3B1AR17 Gm45865-201ENSMUST00000211815 945 ntBASIC12.89□□□□□ -0.35
Chd3B1AR17 AC132384.14-201ENSMUST00000219346 1147 ntBASIC12.89□□□□□ -0.35
Chd3B1AR17 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC12.88□□□□□ -0.35
Chd3B1AR17 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Chd3B1AR17 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
Chd3B1AR17 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Chd3B1AR17 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Chd3B1AR17 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Chd3B1AR17 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Chd3B1AR17 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Chd3B1AR17 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Chd3B1AR17 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Chd3B1AR17 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Chd3B1AR17 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Chd3B1AR17 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC12.88□□□□□ -0.35
Chd3B1AR17 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Chd3B1AR17 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Chd3B1AR17 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Chd3B1AR17 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Chd3B1AR17 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Chd3B1AR17 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Chd3B1AR17 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC12.88□□□□□ -0.35
Chd3B1AR17 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Chd3B1AR17 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Chd3B1AR17 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Chd3B1AR17 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Chd3B1AR17 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Chd3B1AR17 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Gm11793-201ENSMUST00000120433 981 ntBASIC12.87□□□□□ -0.35
Chd3B1AR17 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC12.87□□□□□ -0.35
Chd3B1AR17 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC12.87□□□□□ -0.35
Chd3B1AR17 Gm44772-201ENSMUST00000207623 1191 ntBASIC12.87□□□□□ -0.35
Chd3B1AR17 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Gm15897-201ENSMUST00000117770 1486 ntBASIC12.87□□□□□ -0.35
Chd3B1AR17 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC12.87□□□□□ -0.35
Chd3B1AR17 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Chd3B1AR17 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Chd3B1AR17 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Chd3B1AR17 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
Chd3B1AR17 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Gm13297-201ENSMUST00000120205 934 ntBASIC12.87□□□□□ -0.35
Chd3B1AR17 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC12.87□□□□□ -0.35
Chd3B1AR17 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC12.87□□□□□ -0.35
Chd3B1AR17 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC12.87□□□□□ -0.35
Chd3B1AR17 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC12.87□□□□□ -0.35
Chd3B1AR17 AC166051.1-201ENSMUST00000214313 210 ntBASIC12.87□□□□□ -0.35
Chd3B1AR17 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC12.87□□□□□ -0.35
Chd3B1AR17 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Chd3B1AR17 n-R5s195-201ENSMUST00000082891 119 ntBASIC12.87□□□□□ -0.35
Chd3B1AR17 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Chd3B1AR17 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Chd3B1AR17 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 46 ms