Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Upf1Q9EPU0 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC25.21■■□□□ 1.63
Upf1Q9EPU0 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC25.21■■□□□ 1.63
Upf1Q9EPU0 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC25.21■■□□□ 1.63
Upf1Q9EPU0 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Upf1Q9EPU0 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.62
Upf1Q9EPU0 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Upf1Q9EPU0 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
Upf1Q9EPU0 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Upf1Q9EPU0 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Upf1Q9EPU0 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Upf1Q9EPU0 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
Upf1Q9EPU0 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Upf1Q9EPU0 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Upf1Q9EPU0 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Upf1Q9EPU0 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
Upf1Q9EPU0 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC25.18■■□□□ 1.62
Upf1Q9EPU0 Gm43173-201ENSMUST00000202246 593 ntBASIC25.18■■□□□ 1.62
Upf1Q9EPU0 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC25.18■■□□□ 1.62
Upf1Q9EPU0 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Upf1Q9EPU0 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Upf1Q9EPU0 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Upf1Q9EPU0 AC099934.2-201ENSMUST00000196389 70 ntBASIC25.17■■□□□ 1.62
Upf1Q9EPU0 AC156953.1-201ENSMUST00000196953 70 ntBASIC25.17■■□□□ 1.62
Upf1Q9EPU0 AC157822.2-201ENSMUST00000200291 70 ntBASIC25.17■■□□□ 1.62
Upf1Q9EPU0 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Upf1Q9EPU0 Nsd1-206ENSMUST00000224918 1001 ntBASIC25.17■■□□□ 1.62
Upf1Q9EPU0 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Upf1Q9EPU0 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Upf1Q9EPU0 Gm10620-201ENSMUST00000098379 1332 ntBASIC25.16■■□□□ 1.62
Upf1Q9EPU0 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC25.16■■□□□ 1.62
Upf1Q9EPU0 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC25.16■■□□□ 1.62
Upf1Q9EPU0 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Upf1Q9EPU0 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
Upf1Q9EPU0 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Upf1Q9EPU0 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC25.14■■□□□ 1.62
Upf1Q9EPU0 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Upf1Q9EPU0 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
Upf1Q9EPU0 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
Upf1Q9EPU0 Cdc34b-202ENSMUST00000188741 1252 ntBASIC25.14■■□□□ 1.62
Upf1Q9EPU0 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC25.14■■□□□ 1.62
Upf1Q9EPU0 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC25.14■■□□□ 1.62
Upf1Q9EPU0 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
Upf1Q9EPU0 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC25.14■■□□□ 1.62
Upf1Q9EPU0 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Upf1Q9EPU0 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC25.13■■□□□ 1.61
Upf1Q9EPU0 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
Upf1Q9EPU0 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
Upf1Q9EPU0 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Upf1Q9EPU0 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC25.13■■□□□ 1.61
Upf1Q9EPU0 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Upf1Q9EPU0 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC25.13■■□□□ 1.61
Upf1Q9EPU0 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC25.13■■□□□ 1.61
Upf1Q9EPU0 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Upf1Q9EPU0 Fezf2-202ENSMUST00000224023 1917 ntBASIC25.13■■□□□ 1.61
Upf1Q9EPU0 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Upf1Q9EPU0 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC25.12■■□□□ 1.61
Upf1Q9EPU0 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC25.12■■□□□ 1.61
Upf1Q9EPU0 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
Upf1Q9EPU0 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC25.12■■□□□ 1.61
Upf1Q9EPU0 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
Upf1Q9EPU0 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Upf1Q9EPU0 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC25.11■■□□□ 1.61
Upf1Q9EPU0 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC25.11■■□□□ 1.61
Upf1Q9EPU0 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC25.11■■□□□ 1.61
Upf1Q9EPU0 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
Upf1Q9EPU0 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Upf1Q9EPU0 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Upf1Q9EPU0 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Upf1Q9EPU0 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Upf1Q9EPU0 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Upf1Q9EPU0 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Upf1Q9EPU0 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
Upf1Q9EPU0 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
Upf1Q9EPU0 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Upf1Q9EPU0 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Upf1Q9EPU0 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Upf1Q9EPU0 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Upf1Q9EPU0 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Upf1Q9EPU0 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
Upf1Q9EPU0 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC25.08■■□□□ 1.61
Upf1Q9EPU0 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC25.08■■□□□ 1.61
Upf1Q9EPU0 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
Upf1Q9EPU0 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC25.08■■□□□ 1.61
Upf1Q9EPU0 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
Upf1Q9EPU0 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
Upf1Q9EPU0 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Upf1Q9EPU0 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC25.07■■□□□ 1.6
Upf1Q9EPU0 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Upf1Q9EPU0 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Upf1Q9EPU0 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC25.06■■□□□ 1.6
Upf1Q9EPU0 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
Upf1Q9EPU0 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Upf1Q9EPU0 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Upf1Q9EPU0 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Upf1Q9EPU0 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC25.05■■□□□ 1.6
Upf1Q9EPU0 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
Upf1Q9EPU0 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC25.04■■□□□ 1.6
Upf1Q9EPU0 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Upf1Q9EPU0 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms