Protein–RNA interactions for Protein: Q99JW4

Lims1, LIM and senescent cell antigen-like-containing domain protein 1, mousemouse

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lims1Q99JW4 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lims1Q99JW4 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lims1Q99JW4 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Lims1Q99JW4 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lims1Q99JW4 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lims1Q99JW4 Kdm3b-204ENSMUST00000224715 2032 ntBASIC19.49■□□□□ 0.71
Lims1Q99JW4 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Lims1Q99JW4 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC19.49■□□□□ 0.71
Lims1Q99JW4 Gm16437-201ENSMUST00000025669 507 ntBASIC19.49■□□□□ 0.71
Lims1Q99JW4 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Lims1Q99JW4 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Lims1Q99JW4 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lims1Q99JW4 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC19.48■□□□□ 0.71
Lims1Q99JW4 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lims1Q99JW4 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lims1Q99JW4 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lims1Q99JW4 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lims1Q99JW4 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Lims1Q99JW4 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lims1Q99JW4 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lims1Q99JW4 Mir6538-201ENSMUST00000183713 110 ntBASIC19.47■□□□□ 0.71
Lims1Q99JW4 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC19.47■□□□□ 0.71
Lims1Q99JW4 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lims1Q99JW4 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Lims1Q99JW4 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Lims1Q99JW4 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC19.47■□□□□ 0.71
Lims1Q99JW4 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Lims1Q99JW4 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC19.46■□□□□ 0.71
Lims1Q99JW4 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lims1Q99JW4 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Lims1Q99JW4 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC19.46■□□□□ 0.71
Lims1Q99JW4 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Lims1Q99JW4 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lims1Q99JW4 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lims1Q99JW4 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lims1Q99JW4 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Lims1Q99JW4 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lims1Q99JW4 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Lims1Q99JW4 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lims1Q99JW4 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lims1Q99JW4 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC19.45■□□□□ 0.7
Lims1Q99JW4 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC19.45■□□□□ 0.7
Lims1Q99JW4 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Lims1Q99JW4 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lims1Q99JW4 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lims1Q99JW4 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lims1Q99JW4 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lims1Q99JW4 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Lims1Q99JW4 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Lims1Q99JW4 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Lims1Q99JW4 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC19.44■□□□□ 0.7
Lims1Q99JW4 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lims1Q99JW4 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lims1Q99JW4 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lims1Q99JW4 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lims1Q99JW4 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lims1Q99JW4 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lims1Q99JW4 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Lims1Q99JW4 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lims1Q99JW4 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lims1Q99JW4 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lims1Q99JW4 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lims1Q99JW4 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC19.42■□□□□ 0.7
Lims1Q99JW4 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Lims1Q99JW4 Nsd1-206ENSMUST00000224918 1001 ntBASIC19.42■□□□□ 0.7
Lims1Q99JW4 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lims1Q99JW4 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Lims1Q99JW4 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Lims1Q99JW4 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Lims1Q99JW4 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Lims1Q99JW4 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Lims1Q99JW4 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lims1Q99JW4 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lims1Q99JW4 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Lims1Q99JW4 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lims1Q99JW4 Gm11687-201ENSMUST00000118911 886 ntBASIC19.41■□□□□ 0.7
Lims1Q99JW4 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Lims1Q99JW4 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Lims1Q99JW4 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Lims1Q99JW4 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lims1Q99JW4 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lims1Q99JW4 AC164883.3-201ENSMUST00000227396 1774 ntBASIC19.4■□□□□ 0.7
Lims1Q99JW4 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lims1Q99JW4 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Lims1Q99JW4 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Lims1Q99JW4 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Lims1Q99JW4 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Lims1Q99JW4 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
Lims1Q99JW4 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lims1Q99JW4 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC19.39■□□□□ 0.69
Lims1Q99JW4 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lims1Q99JW4 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lims1Q99JW4 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lims1Q99JW4 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lims1Q99JW4 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Lims1Q99JW4 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
Lims1Q99JW4 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC19.39■□□□□ 0.69
Lims1Q99JW4 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lims1Q99JW4 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lims1Q99JW4 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms