Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Npc1l1Q6T3U4 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
Npc1l1Q6T3U4 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC25.8■■□□□ 1.72
Npc1l1Q6T3U4 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC25.8■■□□□ 1.72
Npc1l1Q6T3U4 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Npc1l1Q6T3U4 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Npc1l1Q6T3U4 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
Npc1l1Q6T3U4 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Npc1l1Q6T3U4 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Npc1l1Q6T3U4 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Npc1l1Q6T3U4 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Npc1l1Q6T3U4 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Npc1l1Q6T3U4 Gm28536-201ENSMUST00000190971 1317 ntBASIC25.79■■□□□ 1.72
Npc1l1Q6T3U4 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
Npc1l1Q6T3U4 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC25.78■■□□□ 1.72
Npc1l1Q6T3U4 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC25.78■■□□□ 1.72
Npc1l1Q6T3U4 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC25.78■■□□□ 1.72
Npc1l1Q6T3U4 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC25.78■■□□□ 1.72
Npc1l1Q6T3U4 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Npc1l1Q6T3U4 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC25.77■■□□□ 1.72
Npc1l1Q6T3U4 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Npc1l1Q6T3U4 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC25.77■■□□□ 1.72
Npc1l1Q6T3U4 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Npc1l1Q6T3U4 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Npc1l1Q6T3U4 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Npc1l1Q6T3U4 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
Npc1l1Q6T3U4 AC115037.1-201ENSMUST00000223391 2173 ntBASIC25.77■■□□□ 1.72
Npc1l1Q6T3U4 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Npc1l1Q6T3U4 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Npc1l1Q6T3U4 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC25.76■■□□□ 1.71
Npc1l1Q6T3U4 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC25.76■■□□□ 1.71
Npc1l1Q6T3U4 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Npc1l1Q6T3U4 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Npc1l1Q6T3U4 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC25.76■■□□□ 1.71
Npc1l1Q6T3U4 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC25.75■■□□□ 1.71
Npc1l1Q6T3U4 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Npc1l1Q6T3U4 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC25.75■■□□□ 1.71
Npc1l1Q6T3U4 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Npc1l1Q6T3U4 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Npc1l1Q6T3U4 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC25.74■■□□□ 1.71
Npc1l1Q6T3U4 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Npc1l1Q6T3U4 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC25.74■■□□□ 1.71
Npc1l1Q6T3U4 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
Npc1l1Q6T3U4 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Npc1l1Q6T3U4 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Npc1l1Q6T3U4 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
Npc1l1Q6T3U4 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Npc1l1Q6T3U4 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC25.73■■□□□ 1.71
Npc1l1Q6T3U4 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Npc1l1Q6T3U4 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Npc1l1Q6T3U4 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC25.73■■□□□ 1.71
Npc1l1Q6T3U4 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC25.72■■□□□ 1.71
Npc1l1Q6T3U4 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Npc1l1Q6T3U4 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
Npc1l1Q6T3U4 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Npc1l1Q6T3U4 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Npc1l1Q6T3U4 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Npc1l1Q6T3U4 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
Npc1l1Q6T3U4 Gm11847-201ENSMUST00000125165 1119 ntBASIC25.7■■□□□ 1.71
Npc1l1Q6T3U4 Gm7417-201ENSMUST00000192950 473 ntBASIC25.7■■□□□ 1.71
Npc1l1Q6T3U4 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC25.7■■□□□ 1.71
Npc1l1Q6T3U4 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC25.7■■□□□ 1.71
Npc1l1Q6T3U4 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC25.7■■□□□ 1.71
Npc1l1Q6T3U4 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Npc1l1Q6T3U4 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Npc1l1Q6T3U4 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Npc1l1Q6T3U4 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC25.69■■□□□ 1.7
Npc1l1Q6T3U4 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC25.68■■□□□ 1.7
Npc1l1Q6T3U4 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC25.68■■□□□ 1.7
Npc1l1Q6T3U4 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Npc1l1Q6T3U4 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Npc1l1Q6T3U4 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Npc1l1Q6T3U4 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC25.68■■□□□ 1.7
Npc1l1Q6T3U4 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Npc1l1Q6T3U4 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
Npc1l1Q6T3U4 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
Npc1l1Q6T3U4 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
Npc1l1Q6T3U4 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
Npc1l1Q6T3U4 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Npc1l1Q6T3U4 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
Npc1l1Q6T3U4 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Npc1l1Q6T3U4 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Npc1l1Q6T3U4 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
Npc1l1Q6T3U4 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Npc1l1Q6T3U4 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC25.65■■□□□ 1.7
Npc1l1Q6T3U4 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Npc1l1Q6T3U4 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
Npc1l1Q6T3U4 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.7
Npc1l1Q6T3U4 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC25.64■■□□□ 1.69
Npc1l1Q6T3U4 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
Npc1l1Q6T3U4 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
Npc1l1Q6T3U4 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
Npc1l1Q6T3U4 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC25.63■■□□□ 1.69
Npc1l1Q6T3U4 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC25.63■■□□□ 1.69
Npc1l1Q6T3U4 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Npc1l1Q6T3U4 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Npc1l1Q6T3U4 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
Npc1l1Q6T3U4 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
Npc1l1Q6T3U4 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
Npc1l1Q6T3U4 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms