Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Six3Q62233 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Six3Q62233 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Six3Q62233 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC20.82■□□□□ 0.92
Six3Q62233 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Six3Q62233 Gm14523-201ENSMUST00000117260 558 ntBASIC20.82■□□□□ 0.92
Six3Q62233 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Six3Q62233 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Six3Q62233 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Six3Q62233 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Six3Q62233 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Six3Q62233 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.82■□□□□ 0.92
Six3Q62233 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Six3Q62233 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Six3Q62233 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Six3Q62233 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.81■□□□□ 0.92
Six3Q62233 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Six3Q62233 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Six3Q62233 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
Six3Q62233 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Six3Q62233 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Six3Q62233 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Six3Q62233 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Six3Q62233 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Six3Q62233 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Six3Q62233 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Six3Q62233 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Six3Q62233 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Six3Q62233 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Six3Q62233 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Six3Q62233 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Six3Q62233 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Six3Q62233 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Six3Q62233 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
Six3Q62233 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Six3Q62233 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC20.77■□□□□ 0.92
Six3Q62233 Gm7332-201ENSMUST00000118351 454 ntBASIC20.77■□□□□ 0.92
Six3Q62233 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Six3Q62233 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Six3Q62233 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Six3Q62233 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Six3Q62233 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Six3Q62233 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Six3Q62233 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Six3Q62233 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Six3Q62233 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Six3Q62233 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
Six3Q62233 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
Six3Q62233 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Six3Q62233 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Six3Q62233 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Six3Q62233 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Six3Q62233 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Six3Q62233 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Six3Q62233 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Six3Q62233 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Six3Q62233 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Six3Q62233 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Six3Q62233 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Six3Q62233 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Six3Q62233 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Six3Q62233 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Six3Q62233 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Six3Q62233 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Six3Q62233 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Six3Q62233 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Six3Q62233 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Six3Q62233 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Six3Q62233 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Six3Q62233 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Six3Q62233 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.72■□□□□ 0.91
Six3Q62233 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.72■□□□□ 0.91
Six3Q62233 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.72■□□□□ 0.91
Six3Q62233 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC20.72■□□□□ 0.91
Six3Q62233 Nsd1-206ENSMUST00000224918 1001 ntBASIC20.72■□□□□ 0.91
Six3Q62233 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Six3Q62233 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Six3Q62233 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Six3Q62233 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC20.71■□□□□ 0.91
Six3Q62233 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Six3Q62233 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Six3Q62233 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Six3Q62233 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Six3Q62233 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Six3Q62233 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.91
Six3Q62233 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Six3Q62233 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Six3Q62233 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
Six3Q62233 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Six3Q62233 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Six3Q62233 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Six3Q62233 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Six3Q62233 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC20.69■□□□□ 0.9
Six3Q62233 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC20.69■□□□□ 0.9
Six3Q62233 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC20.69■□□□□ 0.9
Six3Q62233 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC20.69■□□□□ 0.9
Six3Q62233 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Six3Q62233 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC20.68■□□□□ 0.9
Six3Q62233 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Six3Q62233 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms