Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC19.76■□□□□ 0.75
ShhQ62226 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC19.75■□□□□ 0.75
ShhQ62226 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
ShhQ62226 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC19.75■□□□□ 0.75
ShhQ62226 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ShhQ62226 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ShhQ62226 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ShhQ62226 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ShhQ62226 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ShhQ62226 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ShhQ62226 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ShhQ62226 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ShhQ62226 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ShhQ62226 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
ShhQ62226 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ShhQ62226 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC19.73■□□□□ 0.75
ShhQ62226 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ShhQ62226 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
ShhQ62226 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ShhQ62226 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC19.73■□□□□ 0.75
ShhQ62226 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC19.73■□□□□ 0.75
ShhQ62226 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC19.73■□□□□ 0.75
ShhQ62226 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.73■□□□□ 0.75
ShhQ62226 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
ShhQ62226 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ShhQ62226 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
ShhQ62226 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ShhQ62226 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ShhQ62226 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
ShhQ62226 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ShhQ62226 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC19.72■□□□□ 0.75
ShhQ62226 Gm7417-201ENSMUST00000192950 473 ntBASIC19.72■□□□□ 0.75
ShhQ62226 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ShhQ62226 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
ShhQ62226 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ShhQ62226 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ShhQ62226 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
ShhQ62226 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ShhQ62226 Gm5131-201ENSMUST00000212776 1238 ntBASIC19.71■□□□□ 0.75
ShhQ62226 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ShhQ62226 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC19.71■□□□□ 0.75
ShhQ62226 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ShhQ62226 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ShhQ62226 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
ShhQ62226 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ShhQ62226 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
ShhQ62226 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
ShhQ62226 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
ShhQ62226 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ShhQ62226 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ShhQ62226 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ShhQ62226 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
ShhQ62226 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
ShhQ62226 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC19.69■□□□□ 0.74
ShhQ62226 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ShhQ62226 Gm9847-201ENSMUST00000052528 599 ntBASIC19.69■□□□□ 0.74
ShhQ62226 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
ShhQ62226 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ShhQ62226 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ShhQ62226 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ShhQ62226 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ShhQ62226 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ShhQ62226 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ShhQ62226 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC19.68■□□□□ 0.74
ShhQ62226 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ShhQ62226 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ShhQ62226 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
ShhQ62226 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ShhQ62226 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ShhQ62226 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ShhQ62226 AC117245.4-201ENSMUST00000217388 1646 ntBASIC19.67■□□□□ 0.74
ShhQ62226 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ShhQ62226 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC19.67■□□□□ 0.74
ShhQ62226 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
ShhQ62226 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ShhQ62226 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ShhQ62226 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
ShhQ62226 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ShhQ62226 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
ShhQ62226 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ShhQ62226 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ShhQ62226 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
ShhQ62226 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ShhQ62226 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC19.65■□□□□ 0.74
ShhQ62226 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ShhQ62226 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC19.65■□□□□ 0.74
ShhQ62226 Gm17641-201ENSMUST00000166328 2350 ntBASIC19.65■□□□□ 0.74
ShhQ62226 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
ShhQ62226 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC19.65■□□□□ 0.74
ShhQ62226 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ShhQ62226 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
ShhQ62226 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC19.64■□□□□ 0.73
ShhQ62226 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC19.64■□□□□ 0.73
ShhQ62226 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC19.64■□□□□ 0.73
ShhQ62226 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ShhQ62226 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ShhQ62226 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ShhQ62226 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
ShhQ62226 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
ShhQ62226 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 57.6 ms