Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Usf1Q61069 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
Usf1Q61069 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usf1Q61069 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usf1Q61069 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC19.57■□□□□ 0.72
Usf1Q61069 Gm18284-201ENSMUST00000172604 624 ntBASIC19.57■□□□□ 0.72
Usf1Q61069 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usf1Q61069 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC19.56■□□□□ 0.72
Usf1Q61069 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usf1Q61069 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Usf1Q61069 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Usf1Q61069 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC19.56■□□□□ 0.72
Usf1Q61069 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Usf1Q61069 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usf1Q61069 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usf1Q61069 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usf1Q61069 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usf1Q61069 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usf1Q61069 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC19.55■□□□□ 0.72
Usf1Q61069 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usf1Q61069 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usf1Q61069 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usf1Q61069 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Usf1Q61069 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Usf1Q61069 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Usf1Q61069 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC19.53■□□□□ 0.72
Usf1Q61069 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Usf1Q61069 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
Usf1Q61069 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usf1Q61069 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Usf1Q61069 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usf1Q61069 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usf1Q61069 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usf1Q61069 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC19.52■□□□□ 0.72
Usf1Q61069 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC19.52■□□□□ 0.72
Usf1Q61069 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usf1Q61069 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Usf1Q61069 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC19.52■□□□□ 0.72
Usf1Q61069 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usf1Q61069 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC19.51■□□□□ 0.71
Usf1Q61069 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Usf1Q61069 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usf1Q61069 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.51■□□□□ 0.71
Usf1Q61069 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Usf1Q61069 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usf1Q61069 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Usf1Q61069 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC19.5■□□□□ 0.71
Usf1Q61069 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Usf1Q61069 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC19.5■□□□□ 0.71
Usf1Q61069 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC19.5■□□□□ 0.71
Usf1Q61069 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usf1Q61069 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usf1Q61069 Gm28731-201ENSMUST00000185564 1569 ntBASIC19.49■□□□□ 0.71
Usf1Q61069 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Usf1Q61069 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usf1Q61069 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usf1Q61069 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Usf1Q61069 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC19.49■□□□□ 0.71
Usf1Q61069 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usf1Q61069 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usf1Q61069 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usf1Q61069 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Usf1Q61069 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usf1Q61069 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usf1Q61069 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Usf1Q61069 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usf1Q61069 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usf1Q61069 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
Usf1Q61069 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Usf1Q61069 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Usf1Q61069 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Usf1Q61069 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Usf1Q61069 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Usf1Q61069 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC19.46■□□□□ 0.71
Usf1Q61069 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Usf1Q61069 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC19.46■□□□□ 0.71
Usf1Q61069 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC19.46■□□□□ 0.71
Usf1Q61069 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Usf1Q61069 Gm2011-201ENSMUST00000203124 1263 ntBASIC19.46■□□□□ 0.71
Usf1Q61069 Gm6139-201ENSMUST00000079261 882 ntBASIC19.46■□□□□ 0.71
Usf1Q61069 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Usf1Q61069 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
Usf1Q61069 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Usf1Q61069 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usf1Q61069 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
Usf1Q61069 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usf1Q61069 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Usf1Q61069 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Usf1Q61069 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usf1Q61069 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC19.44■□□□□ 0.7
Usf1Q61069 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usf1Q61069 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
Usf1Q61069 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usf1Q61069 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
Usf1Q61069 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC19.44■□□□□ 0.7
Usf1Q61069 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
Usf1Q61069 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usf1Q61069 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usf1Q61069 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Usf1Q61069 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 79.6 ms