Protein–RNA interactions for Protein: P47806

Gli1, Zinc finger protein GLI1, mousemouse

Predictions only

Length 1,111 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Gli1P47806 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC20.65■□□□□ 0.9
Gli1P47806 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Gli1P47806 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Gli1P47806 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Gli1P47806 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Gli1P47806 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Gli1P47806 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC20.64■□□□□ 0.89
Gli1P47806 Terc-201ENSMUST00000082862 423 ntBASIC20.64■□□□□ 0.89
Gli1P47806 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Gli1P47806 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC20.63■□□□□ 0.89
Gli1P47806 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Gli1P47806 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Gli1P47806 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Gli1P47806 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Gli1P47806 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Gli1P47806 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Gli1P47806 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Gli1P47806 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC20.62■□□□□ 0.89
Gli1P47806 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Gli1P47806 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Gli1P47806 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Gli1P47806 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Gli1P47806 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Gli1P47806 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.61■□□□□ 0.89
Gli1P47806 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Gli1P47806 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Gli1P47806 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Gli1P47806 Gm15546-201ENSMUST00000122095 826 ntBASIC20.61■□□□□ 0.89
Gli1P47806 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Gli1P47806 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Gli1P47806 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC20.61■□□□□ 0.89
Gli1P47806 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Gli1P47806 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Gli1P47806 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Gli1P47806 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Gli1P47806 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Gli1P47806 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.6■□□□□ 0.89
Gli1P47806 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC20.6■□□□□ 0.89
Gli1P47806 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Gli1P47806 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Gli1P47806 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Gli1P47806 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC20.59■□□□□ 0.89
Gli1P47806 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Gli1P47806 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC20.59■□□□□ 0.89
Gli1P47806 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Gli1P47806 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Gli1P47806 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Gli1P47806 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Gli1P47806 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Gli1P47806 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Gli1P47806 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Gli1P47806 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Gli1P47806 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Gli1P47806 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Gli1P47806 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Gli1P47806 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.57■□□□□ 0.88
Gli1P47806 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Gli1P47806 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Gli1P47806 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Gli1P47806 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Gli1P47806 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Gli1P47806 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Gli1P47806 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Gli1P47806 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Gli1P47806 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
Gli1P47806 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Gli1P47806 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Gli1P47806 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Gli1P47806 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Gli1P47806 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Gli1P47806 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Gli1P47806 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Gli1P47806 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
Gli1P47806 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
Gli1P47806 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Gli1P47806 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Gli1P47806 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Gli1P47806 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Gli1P47806 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
Gli1P47806 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Gli1P47806 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
Gli1P47806 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC20.54■□□□□ 0.88
Gli1P47806 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Gli1P47806 Gm37415-201ENSMUST00000192265 2054 ntBASIC20.54■□□□□ 0.88
Gli1P47806 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Gli1P47806 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Gli1P47806 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Gli1P47806 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Gli1P47806 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC20.53■□□□□ 0.88
Gli1P47806 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC20.53■□□□□ 0.88
Gli1P47806 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Gli1P47806 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC20.52■□□□□ 0.88
Gli1P47806 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Gli1P47806 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Gli1P47806 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Gli1P47806 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Gli1P47806 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Gli1P47806 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Gli1P47806 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Gli1P47806 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms