Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
Cdx1P18111 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Cdx1P18111 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Cdx1P18111 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC16.98■□□□□ 0.31
Cdx1P18111 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Cdx1P18111 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Cdx1P18111 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Cdx1P18111 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Cdx1P18111 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Cdx1P18111 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Cdx1P18111 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Cdx1P18111 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Cdx1P18111 Gm11687-201ENSMUST00000118911 886 ntBASIC16.97■□□□□ 0.31
Cdx1P18111 Scarna2-201ENSMUST00000157560 414 ntBASIC16.97■□□□□ 0.31
Cdx1P18111 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Cdx1P18111 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Cdx1P18111 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Cdx1P18111 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
Cdx1P18111 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC16.96■□□□□ 0.31
Cdx1P18111 Gm9806-201ENSMUST00000051080 552 ntBASIC16.96■□□□□ 0.31
Cdx1P18111 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Cdx1P18111 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
Cdx1P18111 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Cdx1P18111 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC16.95■□□□□ 0.3
Cdx1P18111 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Cdx1P18111 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Cdx1P18111 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Cdx1P18111 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Cdx1P18111 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cdx1P18111 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Cdx1P18111 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cdx1P18111 Pkd1-207ENSMUST00000228550 1050 ntBASIC16.94■□□□□ 0.3
Cdx1P18111 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Cdx1P18111 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Cdx1P18111 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Cdx1P18111 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC16.93■□□□□ 0.3
Cdx1P18111 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cdx1P18111 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cdx1P18111 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC16.93■□□□□ 0.3
Cdx1P18111 Mir3960-201ENSMUST00000198213 73 ntBASIC16.93■□□□□ 0.3
Cdx1P18111 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cdx1P18111 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cdx1P18111 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Cdx1P18111 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cdx1P18111 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cdx1P18111 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cdx1P18111 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cdx1P18111 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Cdx1P18111 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Cdx1P18111 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Cdx1P18111 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cdx1P18111 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Cdx1P18111 Gm37136-201ENSMUST00000194368 194 ntBASIC16.91■□□□□ 0.3
Cdx1P18111 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
Cdx1P18111 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Cdx1P18111 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Cdx1P18111 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdx1P18111 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Cdx1P18111 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdx1P18111 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdx1P18111 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Cdx1P18111 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdx1P18111 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdx1P18111 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Cdx1P18111 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdx1P18111 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdx1P18111 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC16.9■□□□□ 0.3
Cdx1P18111 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Cdx1P18111 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Cdx1P18111 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Cdx1P18111 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cdx1P18111 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Cdx1P18111 Gm5112-201ENSMUST00000204407 2368 ntBASIC16.88■□□□□ 0.29
Cdx1P18111 Golph3-202ENSMUST00000226517 2359 ntBASIC16.88■□□□□ 0.29
Cdx1P18111 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cdx1P18111 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cdx1P18111 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Cdx1P18111 Gm16437-201ENSMUST00000025669 507 ntBASIC16.88■□□□□ 0.29
Cdx1P18111 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cdx1P18111 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Cdx1P18111 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Cdx1P18111 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Cdx1P18111 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Cdx1P18111 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
Cdx1P18111 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Cdx1P18111 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Cdx1P18111 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Cdx1P18111 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Cdx1P18111 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC16.86■□□□□ 0.29
Cdx1P18111 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Cdx1P18111 AC153962.1-201ENSMUST00000218530 1948 ntBASIC16.86■□□□□ 0.29
Cdx1P18111 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Cdx1P18111 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Cdx1P18111 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Cdx1P18111 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC16.86■□□□□ 0.29
Cdx1P18111 Gm12366-201ENSMUST00000121722 873 ntBASIC16.86■□□□□ 0.29
Cdx1P18111 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC16.86■□□□□ 0.29
Cdx1P18111 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC16.86■□□□□ 0.29
Cdx1P18111 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Cdx1P18111 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms