Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Lire1P11260 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Lire1P11260 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lire1P11260 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lire1P11260 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lire1P11260 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC19.84■□□□□ 0.77
Lire1P11260 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC19.84■□□□□ 0.77
Lire1P11260 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lire1P11260 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Lire1P11260 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Lire1P11260 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
Lire1P11260 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
Lire1P11260 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC19.83■□□□□ 0.77
Lire1P11260 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Lire1P11260 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Lire1P11260 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Lire1P11260 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
Lire1P11260 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Lire1P11260 Gm5522-201ENSMUST00000189483 1242 ntBASIC19.82■□□□□ 0.76
Lire1P11260 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Lire1P11260 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Lire1P11260 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lire1P11260 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Lire1P11260 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lire1P11260 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Lire1P11260 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.81■□□□□ 0.76
Lire1P11260 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lire1P11260 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lire1P11260 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lire1P11260 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC19.8■□□□□ 0.76
Lire1P11260 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Lire1P11260 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Lire1P11260 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lire1P11260 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lire1P11260 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Lire1P11260 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lire1P11260 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Lire1P11260 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lire1P11260 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Lire1P11260 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lire1P11260 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lire1P11260 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Lire1P11260 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lire1P11260 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lire1P11260 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC19.78■□□□□ 0.76
Lire1P11260 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC19.78■□□□□ 0.76
Lire1P11260 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC19.78■□□□□ 0.76
Lire1P11260 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Lire1P11260 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Lire1P11260 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Lire1P11260 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Lire1P11260 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC19.77■□□□□ 0.76
Lire1P11260 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Lire1P11260 Hsf1-207ENSMUST00000228371 2102 ntBASIC19.76■□□□□ 0.75
Lire1P11260 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lire1P11260 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lire1P11260 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lire1P11260 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Lire1P11260 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lire1P11260 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Lire1P11260 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Lire1P11260 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Lire1P11260 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lire1P11260 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Lire1P11260 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Lire1P11260 Gm43566-201ENSMUST00000196851 808 ntBASIC19.75■□□□□ 0.75
Lire1P11260 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC19.75■□□□□ 0.75
Lire1P11260 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lire1P11260 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Lire1P11260 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lire1P11260 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC19.74■□□□□ 0.75
Lire1P11260 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Lire1P11260 Gm43592-201ENSMUST00000196922 1165 ntBASIC19.74■□□□□ 0.75
Lire1P11260 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lire1P11260 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
Lire1P11260 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Lire1P11260 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lire1P11260 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lire1P11260 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC19.73■□□□□ 0.75
Lire1P11260 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lire1P11260 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC19.73■□□□□ 0.75
Lire1P11260 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lire1P11260 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
Lire1P11260 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lire1P11260 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC19.73■□□□□ 0.75
Lire1P11260 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lire1P11260 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lire1P11260 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Lire1P11260 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Lire1P11260 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lire1P11260 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Lire1P11260 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lire1P11260 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Lire1P11260 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lire1P11260 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Lire1P11260 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lire1P11260 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lire1P11260 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lire1P11260 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lire1P11260 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms