Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC14.18□□□□□ -0.14
Cpsf3Q9QXK7 Gm27731-201ENSMUST00000185192 107 ntBASIC14.18□□□□□ -0.14
Cpsf3Q9QXK7 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC14.18□□□□□ -0.14
Cpsf3Q9QXK7 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC14.18□□□□□ -0.14
Cpsf3Q9QXK7 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Cpsf3Q9QXK7 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC14.18□□□□□ -0.14
Cpsf3Q9QXK7 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cpsf3Q9QXK7 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Cpsf3Q9QXK7 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cpsf3Q9QXK7 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Cpsf3Q9QXK7 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cpsf3Q9QXK7 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cpsf3Q9QXK7 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cpsf3Q9QXK7 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cpsf3Q9QXK7 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cpsf3Q9QXK7 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cpsf3Q9QXK7 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Cpsf3Q9QXK7 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Gm7553-201ENSMUST00000185805 1426 ntBASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Gm9924-202ENSMUST00000192760 2311 ntBASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Gm40466-201ENSMUST00000212174 422 ntBASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Gm10146-201ENSMUST00000072739 309 ntBASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cpsf3Q9QXK7 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Gm43423-201ENSMUST00000198390 2094 ntBASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Gm27682-201ENSMUST00000183930 110 ntBASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Gm28693-202ENSMUST00000190758 331 ntBASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 AC134254.1-201ENSMUST00000221362 167 ntBASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Acot6-202ENSMUST00000222921 3622 ntBASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
Cpsf3Q9QXK7 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Cpsf3Q9QXK7 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 67.1 ms