Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Gm12742-201ENSMUST00000117326 410 ntBASIC12.28□□□□□ -0.44
Cdc40Q9DC48 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 AY702102-202ENSMUST00000194651 1173 ntBASIC12.28□□□□□ -0.44
Cdc40Q9DC48 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Gm17330-201ENSMUST00000221047 165 ntBASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Gm44065-201ENSMUST00000203184 3527 ntBASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdc40Q9DC48 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Cdc40Q9DC48 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC12.27□□□□□ -0.44
Cdc40Q9DC48 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
Cdc40Q9DC48 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC12.27□□□□□ -0.44
Cdc40Q9DC48 AC154262.2-201ENSMUST00000224310 2293 ntBASIC12.27□□□□□ -0.44
Cdc40Q9DC48 Gm14371-201ENSMUST00000138925 1518 ntBASIC12.27□□□□□ -0.44
Cdc40Q9DC48 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Cdc40Q9DC48 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Cdc40Q9DC48 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Cdc40Q9DC48 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdc40Q9DC48 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Gm16342-201ENSMUST00000124025 1025 ntBASIC12.27□□□□□ -0.45
Cdc40Q9DC48 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Mir1938-201ENSMUST00000158746 100 ntBASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Gm38230-201ENSMUST00000193572 1159 ntBASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Gm6983-201ENSMUST00000214912 628 ntBASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Gm9899-201ENSMUST00000065519 555 ntBASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Gm45003-201ENSMUST00000205875 2158 ntBASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Gm9947-201ENSMUST00000067599 2920 ntBASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Cdc40Q9DC48 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Gm27847-201ENSMUST00000183711 107 ntBASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Gm27375-201ENSMUST00000183799 107 ntBASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Gm8463-201ENSMUST00000208573 613 ntBASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC12.26□□□□□ -0.45
Cdc40Q9DC48 AC121805.2-201ENSMUST00000218808 2538 ntBASIC12.26□□□□□ -0.45
Cdc40Q9DC48 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cdc40Q9DC48 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms