Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Use1Q9CQ56 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Gm5989-201ENSMUST00000096092 2077 ntBASIC12.5□□□□□ -0.41
Use1Q9CQ56 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Gm45841-201ENSMUST00000207700 164 ntBASIC12.5□□□□□ -0.41
Use1Q9CQ56 AC165157.4-201ENSMUST00000220587 139 ntBASIC12.5□□□□□ -0.41
Use1Q9CQ56 AC238811.1-201ENSMUST00000225302 441 ntBASIC12.5□□□□□ -0.41
Use1Q9CQ56 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 AC159621.2-201ENSMUST00000223519 1326 ntBASIC12.5□□□□□ -0.41
Use1Q9CQ56 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Use1Q9CQ56 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Use1Q9CQ56 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Gm38037-201ENSMUST00000192600 1624 ntBASIC12.49□□□□□ -0.41
Use1Q9CQ56 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Gm13223-201ENSMUST00000118609 747 ntBASIC12.49□□□□□ -0.41
Use1Q9CQ56 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC12.49□□□□□ -0.41
Use1Q9CQ56 AC159114.1-201ENSMUST00000220349 266 ntBASIC12.49□□□□□ -0.41
Use1Q9CQ56 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
Use1Q9CQ56 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC12.48□□□□□ -0.41
Use1Q9CQ56 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC12.48□□□□□ -0.41
Use1Q9CQ56 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
Use1Q9CQ56 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms