Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdk5rap3Q99LM2 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Gm27194-201ENSMUST00000175753 2936 ntBASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Gm6161-201ENSMUST00000121942 1102 ntBASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Gm6254-201ENSMUST00000168178 1072 ntBASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Gm6153-201ENSMUST00000172004 1058 ntBASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Gm5641-202ENSMUST00000198699 1080 ntBASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Gm19931-201ENSMUST00000198920 368 ntBASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 CT573086.1-201ENSMUST00000227202 1074 ntBASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Gm20445-201ENSMUST00000061905 565 ntBASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdk5rap3Q99LM2 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Gm15376-201ENSMUST00000122258 783 ntBASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Gm26464-201ENSMUST00000157094 305 ntBASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Gm27989-201ENSMUST00000184721 107 ntBASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Gm5279-201ENSMUST00000199575 745 ntBASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Gm19078-201ENSMUST00000206311 727 ntBASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdk5rap3Q99LM2 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms