Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 AC122314.1-201ENSMUST00000223056 2239 ntBASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 AC122459.1-201ENSMUST00000228373 885 ntBASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Gm8399-201ENSMUST00000082300 1117 ntBASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ushbp1Q8R370 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ushbp1Q8R370 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Gm29608-201ENSMUST00000190444 463 ntBASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC14.79□□□□□ -0.04
Ushbp1Q8R370 AC073947.2-201ENSMUST00000215888 1130 ntBASIC14.79□□□□□ -0.04
Ushbp1Q8R370 AC154171.1-201ENSMUST00000224610 643 ntBASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ushbp1Q8R370 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ushbp1Q8R370 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 49 ms