Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
Trim56Q80VI1 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Gm45546-201ENSMUST00000211053 2394 ntBASIC15.55■□□□□ 0.08
Trim56Q80VI1 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Gm8706-201ENSMUST00000197372 1491 ntBASIC15.55■□□□□ 0.08
Trim56Q80VI1 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Gm38049-201ENSMUST00000195698 1372 ntBASIC15.55■□□□□ 0.08
Trim56Q80VI1 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC15.55■□□□□ 0.08
Trim56Q80VI1 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC15.55■□□□□ 0.08
Trim56Q80VI1 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Gm6458-201ENSMUST00000211573 635 ntBASIC15.55■□□□□ 0.08
Trim56Q80VI1 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC15.55■□□□□ 0.08
Trim56Q80VI1 AC166349.1-201ENSMUST00000220866 695 ntBASIC15.55■□□□□ 0.08
Trim56Q80VI1 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Trim56Q80VI1 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Gm45638-201ENSMUST00000211507 2878 ntBASIC15.54■□□□□ 0.08
Trim56Q80VI1 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Dctn4-202ENSMUST00000223590 1530 ntBASIC15.54■□□□□ 0.08
Trim56Q80VI1 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 AC101945.2-201ENSMUST00000227886 1377 ntBASIC15.54■□□□□ 0.08
Trim56Q80VI1 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Gm12384-201ENSMUST00000119228 919 ntBASIC15.54■□□□□ 0.08
Trim56Q80VI1 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Tyms-ps-201ENSMUST00000219550 915 ntBASIC15.54■□□□□ 0.08
Trim56Q80VI1 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 AC126253.1-201ENSMUST00000227974 824 ntBASIC15.54■□□□□ 0.08
Trim56Q80VI1 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Trim56Q80VI1 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC15.53■□□□□ 0.08
Trim56Q80VI1 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Gm12539-201ENSMUST00000121549 1098 ntBASIC15.53■□□□□ 0.08
Trim56Q80VI1 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC15.53■□□□□ 0.08
Trim56Q80VI1 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Gm8565-201ENSMUST00000183259 1014 ntBASIC15.53■□□□□ 0.08
Trim56Q80VI1 Gm5896-201ENSMUST00000189662 1024 ntBASIC15.53■□□□□ 0.08
Trim56Q80VI1 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Trim56Q80VI1 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC15.53■□□□□ 0.08
Trim56Q80VI1 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC15.53■□□□□ 0.08
Trim56Q80VI1 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trim56Q80VI1 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trim56Q80VI1 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 69.8 ms