Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm13492-201ENSMUST00000119772 665 ntBASIC17.01■□□□□ 0.31
Trim28Q62318 Gm13875-201ENSMUST00000120162 282 ntBASIC17.01■□□□□ 0.31
Trim28Q62318 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC17.01■□□□□ 0.31
Trim28Q62318 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC17.01■□□□□ 0.31
Trim28Q62318 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC17.01■□□□□ 0.31
Trim28Q62318 Gm8176-201ENSMUST00000191297 1099 ntBASIC17.01■□□□□ 0.31
Trim28Q62318 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC17.01■□□□□ 0.31
Trim28Q62318 Gm5950-201ENSMUST00000213337 772 ntBASIC17.01■□□□□ 0.31
Trim28Q62318 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC17.01■□□□□ 0.31
Trim28Q62318 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Trim28Q62318 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trim28Q62318 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
Trim28Q62318 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim28Q62318 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trim28Q62318 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim28Q62318 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
Trim28Q62318 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim28Q62318 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trim28Q62318 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
Trim28Q62318 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC17.01■□□□□ 0.31
Trim28Q62318 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 AC167669.2-201ENSMUST00000224417 1620 ntBASIC17■□□□□ 0.31
Trim28Q62318 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Trim28Q62318 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Trim28Q62318 Gm25214-201ENSMUST00000104573 129 ntBASIC17■□□□□ 0.31
Trim28Q62318 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC17■□□□□ 0.31
Trim28Q62318 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC17■□□□□ 0.31
Trim28Q62318 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Trim28Q62318 Gm7789-202ENSMUST00000211273 1400 ntBASIC17■□□□□ 0.31
Trim28Q62318 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC17■□□□□ 0.31
Trim28Q62318 AC138604.1-201ENSMUST00000226969 739 ntBASIC17■□□□□ 0.31
Trim28Q62318 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC17■□□□□ 0.31
Trim28Q62318 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Trim28Q62318 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC17■□□□□ 0.31
Trim28Q62318 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Trim28Q62318 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC17■□□□□ 0.31
Trim28Q62318 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trim28Q62318 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Gm37795-201ENSMUST00000194216 2459 ntBASIC16.99■□□□□ 0.31
Trim28Q62318 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Gm37737-201ENSMUST00000195013 1638 ntBASIC16.99■□□□□ 0.31
Trim28Q62318 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Trim28Q62318 Gm3287-205ENSMUST00000228893 1332 ntBASIC16.99■□□□□ 0.31
Trim28Q62318 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Gm11531-201ENSMUST00000117614 555 ntBASIC16.99■□□□□ 0.31
Trim28Q62318 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC16.99■□□□□ 0.31
Trim28Q62318 Gm13813-201ENSMUST00000120998 787 ntBASIC16.99■□□□□ 0.31
Trim28Q62318 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC16.99■□□□□ 0.31
Trim28Q62318 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
Trim28Q62318 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Gm22058-201ENSMUST00000083393 310 ntBASIC16.99■□□□□ 0.31
Trim28Q62318 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
Trim28Q62318 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC16.99■□□□□ 0.31
Trim28Q62318 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trim28Q62318 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC16.99■□□□□ 0.31
Trim28Q62318 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC16.99■□□□□ 0.31
Trim28Q62318 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim28Q62318 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim28Q62318 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Trim28Q62318 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim28Q62318 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC16.98■□□□□ 0.31
Trim28Q62318 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim28Q62318 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Trim28Q62318 Gm5939-201ENSMUST00000119613 2874 ntBASIC16.98■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms