Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 AC110817.1-201ENSMUST00000225706 605 ntBASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 CT573086.1-201ENSMUST00000227202 1074 ntBASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Upf3bQ3ULL6 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Gm37644-201ENSMUST00000192190 2270 ntBASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Upf3bQ3ULL6 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 AC121805.2-201ENSMUST00000218808 2538 ntBASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Gm15544-201ENSMUST00000118776 1531 ntBASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Gm14350-201ENSMUST00000116642 640 ntBASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Gm5745-201ENSMUST00000183748 313 ntBASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Gm18041-201ENSMUST00000218210 618 ntBASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Gm16372-201ENSMUST00000073088 450 ntBASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Upf3bQ3ULL6 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms