Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Gm38297-201ENSMUST00000195122 1057 ntBASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Gm38157-201ENSMUST00000194178 1698 ntBASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Upf3aQ3ULJ3 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
Upf3aQ3ULJ3 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Upf3aQ3ULJ3 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 AC113441.2-201ENSMUST00000221538 1468 ntBASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Gm8176-201ENSMUST00000191297 1099 ntBASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Mettl6-204ENSMUST00000227595 1027 ntBASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Upf3aQ3ULJ3 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Mir5132-201ENSMUST00000175166 71 ntBASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Gm44772-201ENSMUST00000207623 1191 ntBASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC13.82□□□□□ -0.2
Upf3aQ3ULJ3 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms