Protein–RNA interactions for Protein: P97952

Scn1b, Sodium channel subunit beta-1, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1bP97952 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Scn1bP97952 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Scn1bP97952 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Scn1bP97952 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Scn1bP97952 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Scn1bP97952 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC12.05□□□□□ -0.48
Scn1bP97952 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
Scn1bP97952 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC12.05□□□□□ -0.48
Scn1bP97952 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC12.05□□□□□ -0.48
Scn1bP97952 Gm5264-201ENSMUST00000190584 848 ntBASIC12.05□□□□□ -0.48
Scn1bP97952 Ighv8-7-201ENSMUST00000194349 297 ntBASIC12.05□□□□□ -0.48
Scn1bP97952 Gm20553-201ENSMUST00000204205 844 ntBASIC12.05□□□□□ -0.48
Scn1bP97952 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
Scn1bP97952 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC12.05□□□□□ -0.48
Scn1bP97952 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Scn1bP97952 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Scn1bP97952 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Scn1bP97952 Gm43051-201ENSMUST00000201096 2678 ntBASIC12.04□□□□□ -0.48
Scn1bP97952 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Scn1bP97952 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC12.04□□□□□ -0.48
Scn1bP97952 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Scn1bP97952 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Gm4913-201ENSMUST00000117075 1290 ntBASIC12.04□□□□□ -0.48
Scn1bP97952 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC12.04□□□□□ -0.48
Scn1bP97952 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC12.04□□□□□ -0.48
Scn1bP97952 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Scn1bP97952 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC12.04□□□□□ -0.48
Scn1bP97952 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC12.04□□□□□ -0.48
Scn1bP97952 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Scn1bP97952 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Scn1bP97952 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC12.04□□□□□ -0.48
Scn1bP97952 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC12.04□□□□□ -0.48
Scn1bP97952 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Scn1bP97952 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Scn1bP97952 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Scn1bP97952 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Scn1bP97952 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Scn1bP97952 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Scn1bP97952 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Scn1bP97952 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Scn1bP97952 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Scn1bP97952 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Scn1bP97952 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Scn1bP97952 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Scn1bP97952 Nrn1-204ENSMUST00000224323 1779 ntBASIC12.03□□□□□ -0.48
Scn1bP97952 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Scn1bP97952 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Scn1bP97952 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Scn1bP97952 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms