Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm6023-201ENSMUST00000118217 606 ntBASIC11.4□□□□□ -0.58
Nkx3-1P97436 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Gm11591-201ENSMUST00000120063 702 ntBASIC11.4□□□□□ -0.58
Nkx3-1P97436 Gm13786-201ENSMUST00000122371 333 ntBASIC11.4□□□□□ -0.58
Nkx3-1P97436 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Gm5637-201ENSMUST00000153890 1119 ntBASIC11.4□□□□□ -0.58
Nkx3-1P97436 Gm26185-201ENSMUST00000157692 266 ntBASIC11.4□□□□□ -0.58
Nkx3-1P97436 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC11.4□□□□□ -0.58
Nkx3-1P97436 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Nkx3-1P97436 Gm19863-201ENSMUST00000192480 2218 ntBASIC11.4□□□□□ -0.58
Nkx3-1P97436 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Nkx3-1P97436 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Nkx3-1P97436 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Nkx3-1P97436 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.59
Nkx3-1P97436 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.59
Nkx3-1P97436 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Nkx3-1P97436 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.59
Nkx3-1P97436 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC11.4□□□□□ -0.59
Nkx3-1P97436 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Nkx3-1P97436 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.59
Nkx3-1P97436 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Nkx3-1P97436 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 CT025610.1-201ENSMUST00000224552 1786 ntBASIC11.39□□□□□ -0.59
Nkx3-1P97436 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC11.39□□□□□ -0.59
Nkx3-1P97436 Gm11658-201ENSMUST00000120913 1008 ntBASIC11.39□□□□□ -0.59
Nkx3-1P97436 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Nkx3-1P97436 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Gm2467-201ENSMUST00000182266 1010 ntBASIC11.39□□□□□ -0.59
Nkx3-1P97436 Gm6981-201ENSMUST00000182467 1008 ntBASIC11.39□□□□□ -0.59
Nkx3-1P97436 Gm18056-201ENSMUST00000207670 568 ntBASIC11.39□□□□□ -0.59
Nkx3-1P97436 Gm18061-201ENSMUST00000208350 562 ntBASIC11.39□□□□□ -0.59
Nkx3-1P97436 Gm18063-201ENSMUST00000208529 568 ntBASIC11.39□□□□□ -0.59
Nkx3-1P97436 Gm18052-201ENSMUST00000208750 559 ntBASIC11.39□□□□□ -0.59
Nkx3-1P97436 Gm19163-201ENSMUST00000223313 780 ntBASIC11.39□□□□□ -0.59
Nkx3-1P97436 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Gm43423-201ENSMUST00000198390 2094 ntBASIC11.39□□□□□ -0.59
Nkx3-1P97436 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Nkx3-1P97436 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Gm7899-201ENSMUST00000192935 1897 ntBASIC11.38□□□□□ -0.59
Nkx3-1P97436 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Nkx3-1P97436 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms