Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Tnfsf4P43488 Gm44241-201ENSMUST00000203230 1662 ntBASIC12.76□□□□□ -0.37
Tnfsf4P43488 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Tnfsf4P43488 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Tnfsf4P43488 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Tnfsf4P43488 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Tnfsf4P43488 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Tnfsf4P43488 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC12.76□□□□□ -0.37
Tnfsf4P43488 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Tnfsf4P43488 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Tnfsf4P43488 Rubie-203ENSMUST00000227803 2430 ntBASIC12.76□□□□□ -0.37
Tnfsf4P43488 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Tnfsf4P43488 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Tnfsf4P43488 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Gm6161-201ENSMUST00000121942 1102 ntBASIC12.75□□□□□ -0.37
Tnfsf4P43488 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC12.75□□□□□ -0.37
Tnfsf4P43488 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Gm6254-201ENSMUST00000168178 1072 ntBASIC12.75□□□□□ -0.37
Tnfsf4P43488 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Gm6153-201ENSMUST00000172004 1058 ntBASIC12.75□□□□□ -0.37
Tnfsf4P43488 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Gm27306-201ENSMUST00000183970 107 ntBASIC12.75□□□□□ -0.37
Tnfsf4P43488 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Gm7114-201ENSMUST00000190159 1789 ntBASIC12.75□□□□□ -0.37
Tnfsf4P43488 Gm43094-201ENSMUST00000196549 921 ntBASIC12.75□□□□□ -0.37
Tnfsf4P43488 Gm5641-202ENSMUST00000198699 1080 ntBASIC12.75□□□□□ -0.37
Tnfsf4P43488 Gm19931-201ENSMUST00000198920 368 ntBASIC12.75□□□□□ -0.37
Tnfsf4P43488 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC12.75□□□□□ -0.37
Tnfsf4P43488 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC12.75□□□□□ -0.37
Tnfsf4P43488 CT573086.1-201ENSMUST00000227202 1074 ntBASIC12.75□□□□□ -0.37
Tnfsf4P43488 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Tnfsf4P43488 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Gm42863-201ENSMUST00000197875 2958 ntBASIC12.74□□□□□ -0.37
Tnfsf4P43488 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC12.74□□□□□ -0.37
Tnfsf4P43488 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Gm21854-201ENSMUST00000179901 471 ntBASIC12.74□□□□□ -0.37
Tnfsf4P43488 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC12.74□□□□□ -0.37
Tnfsf4P43488 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC12.74□□□□□ -0.37
Tnfsf4P43488 AC139382.1-201ENSMUST00000221402 498 ntBASIC12.74□□□□□ -0.37
Tnfsf4P43488 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC12.74□□□□□ -0.37
Tnfsf4P43488 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Tnfsf4P43488 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Tnfsf4P43488 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
Tnfsf4P43488 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Tnfsf4P43488 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Tnfsf4P43488 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Tnfsf4P43488 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC12.73□□□□□ -0.37
Tnfsf4P43488 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Tnfsf4P43488 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Tnfsf4P43488 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
Tnfsf4P43488 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC12.73□□□□□ -0.37
Tnfsf4P43488 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Tnfsf4P43488 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms