Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC10.38□□□□□ -0.75
Hoxd3P09027 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
Hoxd3P09027 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC10.38□□□□□ -0.75
Hoxd3P09027 Gm9755-201ENSMUST00000032981 1356 ntBASIC10.38□□□□□ -0.75
Hoxd3P09027 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Hoxd3P09027 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
Hoxd3P09027 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Hoxd3P09027 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Hoxd3P09027 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC10.37□□□□□ -0.75
Hoxd3P09027 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC10.37□□□□□ -0.75
Hoxd3P09027 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC10.37□□□□□ -0.75
Hoxd3P09027 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC10.37□□□□□ -0.75
Hoxd3P09027 Gm13050-201ENSMUST00000122149 1345 ntBASIC10.37□□□□□ -0.75
Hoxd3P09027 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC10.37□□□□□ -0.75
Hoxd3P09027 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC10.37□□□□□ -0.75
Hoxd3P09027 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC10.37□□□□□ -0.75
Hoxd3P09027 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC10.37□□□□□ -0.75
Hoxd3P09027 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
Hoxd3P09027 Skint8-205ENSMUST00000165046 1280 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC10.37□□□□□ -0.75
Hoxd3P09027 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
Hoxd3P09027 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Gm29649-201ENSMUST00000185649 419 ntBASIC10.37□□□□□ -0.75
Hoxd3P09027 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Gm7561-201ENSMUST00000211203 886 ntBASIC10.37□□□□□ -0.75
Hoxd3P09027 AC156801.1-201ENSMUST00000216158 493 ntTSL 5 BASIC10.37□□□□□ -0.75
Hoxd3P09027 4930550C14Rik-204ENSMUST00000217318 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Olfr1385-201ENSMUST00000071807 930 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
Hoxd3P09027 Gm6091-201ENSMUST00000098307 165 ntBASIC10.37□□□□□ -0.75
Hoxd3P09027 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC10.37□□□□□ -0.75
Hoxd3P09027 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Hoxd3P09027 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC10.36□□□□□ -0.75
Hoxd3P09027 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Hoxd3P09027 Zscan30-202ENSMUST00000224144 1458 ntBASIC10.36□□□□□ -0.75
Hoxd3P09027 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Hoxd3P09027 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Hoxd3P09027 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC10.36□□□□□ -0.75
Hoxd3P09027 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
Hoxd3P09027 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Gm5687-201ENSMUST00000118252 640 ntBASIC10.36□□□□□ -0.75
Hoxd3P09027 Gm8312-201ENSMUST00000119380 618 ntBASIC10.36□□□□□ -0.75
Hoxd3P09027 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Cgrrf1-203ENSMUST00000133989 873 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 1700120G11Rik-201ENSMUST00000150273 491 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Gm24196-201ENSMUST00000179161 110 ntBASIC10.36□□□□□ -0.75
Hoxd3P09027 Mir7085-201ENSMUST00000184353 66 ntBASIC10.36□□□□□ -0.75
Hoxd3P09027 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC10.36□□□□□ -0.75
Hoxd3P09027 Gm42516-201ENSMUST00000198691 767 ntBASIC10.36□□□□□ -0.75
Hoxd3P09027 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC10.36□□□□□ -0.75
Hoxd3P09027 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC10.36□□□□□ -0.75
Hoxd3P09027 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC10.36□□□□□ -0.75
Hoxd3P09027 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Snapc5-201ENSMUST00000034965 1228 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Hoxd3P09027 Oosp3-201ENSMUST00000069760 807 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 40.9 ms