Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC11.98□□□□□ -0.49
Lmx1bO88609 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Lmx1bO88609 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Lmx1bO88609 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Lmx1bO88609 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
Lmx1bO88609 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Lmx1bO88609 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Lmx1bO88609 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Lmx1bO88609 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC11.98□□□□□ -0.49
Lmx1bO88609 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Lmx1bO88609 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Lmx1bO88609 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Lmx1bO88609 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Lmx1bO88609 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Lmx1bO88609 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Lmx1bO88609 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC11.98□□□□□ -0.49
Lmx1bO88609 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC11.97□□□□□ -0.49
Lmx1bO88609 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 AC139054.1-201ENSMUST00000226898 1598 ntBASIC11.97□□□□□ -0.49
Lmx1bO88609 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Gm37644-201ENSMUST00000192190 2270 ntBASIC11.97□□□□□ -0.49
Lmx1bO88609 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Trav4d-2-201ENSMUST00000120914 335 ntBASIC11.97□□□□□ -0.49
Lmx1bO88609 Gm10156-201ENSMUST00000122364 462 ntBASIC11.97□□□□□ -0.49
Lmx1bO88609 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC11.97□□□□□ -0.49
Lmx1bO88609 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC11.97□□□□□ -0.49
Lmx1bO88609 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC11.97□□□□□ -0.49
Lmx1bO88609 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC11.97□□□□□ -0.49
Lmx1bO88609 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC11.97□□□□□ -0.49
Lmx1bO88609 AC126253.1-201ENSMUST00000227974 824 ntBASIC11.97□□□□□ -0.49
Lmx1bO88609 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Lmx1bO88609 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Lmx1bO88609 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC11.97□□□□□ -0.49
Lmx1bO88609 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Lmx1bO88609 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Lmx1bO88609 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC11.97□□□□□ -0.49
Lmx1bO88609 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC11.96□□□□□ -0.49
Lmx1bO88609 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC11.96□□□□□ -0.49
Lmx1bO88609 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC11.96□□□□□ -0.49
Lmx1bO88609 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Lmx1bO88609 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Gm8213-201ENSMUST00000118191 441 ntBASIC11.96□□□□□ -0.49
Lmx1bO88609 Gm13369-201ENSMUST00000119442 987 ntBASIC11.96□□□□□ -0.49
Lmx1bO88609 Gm11400-201ENSMUST00000120853 1214 ntBASIC11.96□□□□□ -0.49
Lmx1bO88609 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Gm17420-201ENSMUST00000164753 153 ntBASIC11.96□□□□□ -0.49
Lmx1bO88609 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Lmx1bO88609 Mir6420-201ENSMUST00000185032 102 ntBASIC11.96□□□□□ -0.49
Lmx1bO88609 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC11.96□□□□□ -0.49
Lmx1bO88609 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC11.96□□□□□ -0.49
Lmx1bO88609 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
Lmx1bO88609 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Lmx1bO88609 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lmx1bO88609 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lmx1bO88609 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lmx1bO88609 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Lmx1bO88609 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lmx1bO88609 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lmx1bO88609 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Lmx1bO88609 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms