Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ube3bQ9ES34 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ube3bQ9ES34 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ube3bQ9ES34 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Ube3bQ9ES34 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC15.69■□□□□ 0.1
Ube3bQ9ES34 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ube3bQ9ES34 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ube3bQ9ES34 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ube3bQ9ES34 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC15.69■□□□□ 0.1
Ube3bQ9ES34 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC15.69■□□□□ 0.1
Ube3bQ9ES34 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ube3bQ9ES34 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ube3bQ9ES34 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ube3bQ9ES34 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Mir1938-201ENSMUST00000158746 100 ntBASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Gm17208-201ENSMUST00000168388 535 ntBASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Gm37008-201ENSMUST00000195712 319 ntBASIC15.68■□□□□ 0.1
Ube3bQ9ES34 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Ube3bQ9ES34 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Gm44291-201ENSMUST00000203102 2865 ntBASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Gm11591-201ENSMUST00000120063 702 ntBASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Gm6222-202ENSMUST00000182143 629 ntBASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 AC122314.1-201ENSMUST00000223056 2239 ntBASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Ube3bQ9ES34 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ube3bQ9ES34 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Ube3bQ9ES34 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ube3bQ9ES34 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Ube3bQ9ES34 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC15.66■□□□□ 0.1
Ube3bQ9ES34 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Ube3bQ9ES34 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ube3bQ9ES34 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ube3bQ9ES34 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ube3bQ9ES34 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ube3bQ9ES34 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ube3bQ9ES34 Snord83b-201ENSMUST00000104546 94 ntBASIC15.66■□□□□ 0.1
Ube3bQ9ES34 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Ube3bQ9ES34 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC15.66■□□□□ 0.1
Ube3bQ9ES34 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC15.66■□□□□ 0.1
Ube3bQ9ES34 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms