Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Gm5687-201ENSMUST00000118252 640 ntBASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 AC154532.1-201ENSMUST00000227860 965 ntBASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Gm37844-201ENSMUST00000192473 4097 ntBASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ddx56Q9D0R4 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Gm27701-201ENSMUST00000184498 110 ntBASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Gm2495-201ENSMUST00000191160 466 ntBASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Gm5276-201ENSMUST00000196683 1047 ntBASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Gtpbp10-211ENSMUST00000198799 648 ntBASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 AC125117.1-201ENSMUST00000228121 468 ntBASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Abhd6-203ENSMUST00000225234 1958 ntBASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ddx56Q9D0R4 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
Ddx56Q9D0R4 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Gm10176-201ENSMUST00000159707 2264 ntBASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Gm37644-201ENSMUST00000192190 2270 ntBASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Gm18630-201ENSMUST00000222109 1397 ntBASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Gm5303-201ENSMUST00000117943 1252 ntBASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Gm12091-201ENSMUST00000146791 830 ntBASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC13.89□□□□□ -0.19
Ddx56Q9D0R4 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 65.5 ms