Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Smc1aQ9CU62 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Smc1aQ9CU62 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC14.82□□□□□ -0.04
Smc1aQ9CU62 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Smc1aQ9CU62 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Smc1aQ9CU62 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Smc1aQ9CU62 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Smc1aQ9CU62 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Smc1aQ9CU62 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Smc1aQ9CU62 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Smc1aQ9CU62 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Smc1aQ9CU62 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Mir1982-201ENSMUST00000157368 74 ntBASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Gm6244-201ENSMUST00000178732 841 ntBASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Ighv8-14-201ENSMUST00000196781 358 ntBASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Gm6007-201ENSMUST00000208170 823 ntBASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Gm10729-202ENSMUST00000193403 1375 ntBASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Smc1aQ9CU62 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Gm27839-201ENSMUST00000184242 106 ntBASIC14.8□□□□□ -0.04
Smc1aQ9CU62 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 AC166349.1-201ENSMUST00000220866 695 ntBASIC14.8□□□□□ -0.04
Smc1aQ9CU62 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Gm9816-201ENSMUST00000122292 1414 ntBASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Smc1aQ9CU62 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Smc1aQ9CU62 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 52.3 ms