Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC15.09■□□□□ 0.01
Trim11Q99PQ2 Gm44855-201ENSMUST00000205725 362 ntBASIC15.09■□□□□ 0.01
Trim11Q99PQ2 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim11Q99PQ2 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim11Q99PQ2 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim11Q99PQ2 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim11Q99PQ2 Gm9947-201ENSMUST00000067599 2920 ntBASIC15.09■□□□□ 0.01
Trim11Q99PQ2 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim11Q99PQ2 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim11Q99PQ2 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim11Q99PQ2 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
Trim11Q99PQ2 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim11Q99PQ2 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim11Q99PQ2 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim11Q99PQ2 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC15.08■□□□□ 0.01
Trim11Q99PQ2 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim11Q99PQ2 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim11Q99PQ2 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Trim11Q99PQ2 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC15.08■□□□□ 0
Trim11Q99PQ2 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
Trim11Q99PQ2 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC15.08■□□□□ 0
Trim11Q99PQ2 Gm19931-201ENSMUST00000198920 368 ntBASIC15.08■□□□□ 0
Trim11Q99PQ2 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim11Q99PQ2 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim11Q99PQ2 Rn7sk-201ENSMUST00000083103 331 ntBASIC15.08■□□□□ 0
Trim11Q99PQ2 Gm26315-201ENSMUST00000083890 321 ntBASIC15.08■□□□□ 0
Trim11Q99PQ2 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Trim11Q99PQ2 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim11Q99PQ2 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim11Q99PQ2 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Trim11Q99PQ2 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
Trim11Q99PQ2 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Trim11Q99PQ2 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim11Q99PQ2 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim11Q99PQ2 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Trim11Q99PQ2 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim11Q99PQ2 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
Trim11Q99PQ2 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim11Q99PQ2 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trim11Q99PQ2 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Trim11Q99PQ2 Gm15371-201ENSMUST00000117057 784 ntBASIC15.07■□□□□ 0
Trim11Q99PQ2 Gm11400-201ENSMUST00000120853 1214 ntBASIC15.07■□□□□ 0
Trim11Q99PQ2 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC15.07■□□□□ 0
Trim11Q99PQ2 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Trim11Q99PQ2 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC15.07■□□□□ 0
Trim11Q99PQ2 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC15.07■□□□□ 0
Trim11Q99PQ2 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trim11Q99PQ2 AC134335.2-201ENSMUST00000227660 440 ntBASIC15.07■□□□□ 0
Trim11Q99PQ2 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim11Q99PQ2 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim11Q99PQ2 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC15.07■□□□□ 0
Trim11Q99PQ2 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim11Q99PQ2 AC096628.2-201ENSMUST00000225443 1413 ntBASIC15.07■□□□□ 0
Trim11Q99PQ2 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trim11Q99PQ2 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC15.07■□□□□ 0
Trim11Q99PQ2 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Trim11Q99PQ2 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trim11Q99PQ2 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC15.07■□□□□ 0
Trim11Q99PQ2 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim11Q99PQ2 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC15.06■□□□□ 0
Trim11Q99PQ2 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Trim11Q99PQ2 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Ssr1-203ENSMUST00000225246 1825 ntBASIC15.06■□□□□ 0
Trim11Q99PQ2 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Trim11Q99PQ2 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Gm28631-201ENSMUST00000190740 334 ntBASIC15.06■□□□□ 0
Trim11Q99PQ2 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC15.06■□□□□ 0
Trim11Q99PQ2 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC15.06■□□□□ 0
Trim11Q99PQ2 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC15.06■□□□□ 0
Trim11Q99PQ2 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Ntrk2-208ENSMUST00000225583 2719 ntBASIC15.06■□□□□ 0
Trim11Q99PQ2 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC15.06■□□□□ 0
Trim11Q99PQ2 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trim11Q99PQ2 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC15.05■□□□□ 0
Trim11Q99PQ2 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Trim11Q99PQ2 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
Trim11Q99PQ2 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Trim11Q99PQ2 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
Trim11Q99PQ2 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Trim11Q99PQ2 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Trim11Q99PQ2 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Trim11Q99PQ2 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms