Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
Usp47Q8BY87 Rassf8-202ENSMUST00000058538 1131 ntBASIC18.58■□□□□ 0.57
Usp47Q8BY87 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Usp47Q8BY87 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.57
Usp47Q8BY87 AC137842.1-201ENSMUST00000227896 2064 ntBASIC18.58■□□□□ 0.56
Usp47Q8BY87 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Usp47Q8BY87 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Usp47Q8BY87 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Usp47Q8BY87 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Usp47Q8BY87 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
Usp47Q8BY87 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Usp47Q8BY87 Gm11661-201ENSMUST00000121761 1327 ntBASIC18.58■□□□□ 0.56
Usp47Q8BY87 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Usp47Q8BY87 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Usp47Q8BY87 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Usp47Q8BY87 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Usp47Q8BY87 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Usp47Q8BY87 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usp47Q8BY87 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usp47Q8BY87 Gm15198-201ENSMUST00000117283 177 ntBASIC18.57■□□□□ 0.56
Usp47Q8BY87 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC18.57■□□□□ 0.56
Usp47Q8BY87 Gm6013-201ENSMUST00000212264 699 ntBASIC18.57■□□□□ 0.56
Usp47Q8BY87 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Usp47Q8BY87 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usp47Q8BY87 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usp47Q8BY87 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usp47Q8BY87 Gm15897-201ENSMUST00000117770 1486 ntBASIC18.57■□□□□ 0.56
Usp47Q8BY87 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Usp47Q8BY87 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Usp47Q8BY87 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Usp47Q8BY87 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usp47Q8BY87 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usp47Q8BY87 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usp47Q8BY87 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Usp47Q8BY87 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usp47Q8BY87 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usp47Q8BY87 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Usp47Q8BY87 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC18.56■□□□□ 0.56
Usp47Q8BY87 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 AC069562.3-201ENSMUST00000225387 587 ntBASIC18.56■□□□□ 0.56
Usp47Q8BY87 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Gm5939-201ENSMUST00000119613 2874 ntBASIC18.56■□□□□ 0.56
Usp47Q8BY87 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usp47Q8BY87 Gm42853-201ENSMUST00000201273 1387 ntBASIC18.56■□□□□ 0.56
Usp47Q8BY87 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Gm45930-201ENSMUST00000221330 292 ntBASIC18.55■□□□□ 0.56
Usp47Q8BY87 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Gm44775-201ENSMUST00000207266 1456 ntBASIC18.55■□□□□ 0.56
Usp47Q8BY87 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Gm12291-201ENSMUST00000121627 311 ntBASIC18.55■□□□□ 0.56
Usp47Q8BY87 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC18.55■□□□□ 0.56
Usp47Q8BY87 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC18.55■□□□□ 0.56
Usp47Q8BY87 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms