Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm44958-201ENSMUST00000203734 736 ntBASIC13.07□□□□□ -0.32
Col9a1Q05722 Gm9463-201ENSMUST00000206707 601 ntBASIC13.07□□□□□ -0.32
Col9a1Q05722 Gm18463-201ENSMUST00000207258 474 ntBASIC13.07□□□□□ -0.32
Col9a1Q05722 Gm45120-201ENSMUST00000208880 408 ntBASIC13.07□□□□□ -0.32
Col9a1Q05722 Gm44582-201ENSMUST00000209125 445 ntBASIC13.07□□□□□ -0.32
Col9a1Q05722 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Clec2g-202ENSMUST00000075789 729 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Col9a1Q05722 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Col9a1Q05722 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
Col9a1Q05722 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC13.07□□□□□ -0.32
Col9a1Q05722 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC13.07□□□□□ -0.32
Col9a1Q05722 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC13.07□□□□□ -0.32
Col9a1Q05722 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Ccna1-204ENSMUST00000198320 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col9a1Q05722 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC13.06□□□□□ -0.32
Col9a1Q05722 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Col9a1Q05722 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Col9a1Q05722 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
Col9a1Q05722 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Col9a1Q05722 Derl2-202ENSMUST00000108523 884 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 Gm12073-201ENSMUST00000117382 524 ntBASIC13.06□□□□□ -0.32
Col9a1Q05722 Gm13296-201ENSMUST00000117854 997 ntBASIC13.06□□□□□ -0.32
Col9a1Q05722 Olfr1118-201ENSMUST00000121296 996 ntAPPRIS P2 BASIC13.06□□□□□ -0.32
Col9a1Q05722 Gm15929-201ENSMUST00000138926 1161 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 2810403D21Rik-208ENSMUST00000153212 1005 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 Ndufc1-204ENSMUST00000193279 315 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
Col9a1Q05722 5430434I15Rik-201ENSMUST00000197658 1257 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 Gm5340-201ENSMUST00000203733 880 ntBASIC13.06□□□□□ -0.32
Col9a1Q05722 A530053G22Rik-204ENSMUST00000204579 536 ntTSL 2 BASIC13.06□□□□□ -0.32
Col9a1Q05722 Gm4768-201ENSMUST00000206199 686 ntBASIC13.06□□□□□ -0.32
Col9a1Q05722 Gm18871-201ENSMUST00000218655 745 ntBASIC13.06□□□□□ -0.32
Col9a1Q05722 Gm40761-201ENSMUST00000219123 1153 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 AC133598.4-201ENSMUST00000224577 454 ntBASIC13.06□□□□□ -0.32
Col9a1Q05722 Olfr1242-201ENSMUST00000099777 1053 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Col9a1Q05722 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC13.06□□□□□ -0.32
Col9a1Q05722 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Col9a1Q05722 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 Gm45114-201ENSMUST00000208280 1349 ntBASIC13.06□□□□□ -0.32
Col9a1Q05722 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC13.06□□□□□ -0.32
Col9a1Q05722 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Col9a1Q05722 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC13.06□□□□□ -0.32
Col9a1Q05722 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col9a1Q05722 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC13.06□□□□□ -0.32
Col9a1Q05722 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col9a1Q05722 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col9a1Q05722 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Col9a1Q05722 Gm13859-201ENSMUST00000119936 1423 ntBASIC13.05□□□□□ -0.32
Col9a1Q05722 Olfr570-202ENSMUST00000209778 1423 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Col9a1Q05722 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col9a1Q05722 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col9a1Q05722 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC13.05□□□□□ -0.32
Col9a1Q05722 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC13.05□□□□□ -0.32
Col9a1Q05722 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col9a1Q05722 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col9a1Q05722 AC126444.1-201ENSMUST00000225938 1768 ntBASIC13.05□□□□□ -0.32
Col9a1Q05722 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC13.05□□□□□ -0.32
Col9a1Q05722 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC13.05□□□□□ -0.32
Col9a1Q05722 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col9a1Q05722 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col9a1Q05722 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC13.05□□□□□ -0.32
Col9a1Q05722 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
Col9a1Q05722 Gm12363-201ENSMUST00000122250 668 ntBASIC13.05□□□□□ -0.32
Col9a1Q05722 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC13.05□□□□□ -0.32
Col9a1Q05722 Hsd11b1-203ENSMUST00000160929 1256 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col9a1Q05722 Itgb1bp1-202ENSMUST00000172834 801 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col9a1Q05722 Gm29608-201ENSMUST00000190444 463 ntBASIC13.05□□□□□ -0.32
Col9a1Q05722 Gm42734-201ENSMUST00000201656 878 ntBASIC13.05□□□□□ -0.32
Col9a1Q05722 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col9a1Q05722 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
Col9a1Q05722 RMST_1.1-204ENSMUST00000217871 699 ntTSL 5 BASIC13.05□□□□□ -0.32
Col9a1Q05722 CT030135.2-201ENSMUST00000225255 893 ntBASIC13.05□□□□□ -0.32
Col9a1Q05722 Cox20-201ENSMUST00000027781 471 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col9a1Q05722 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col9a1Q05722 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col9a1Q05722 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 51.8 ms