Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Col6a1Q04857 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a1Q04857 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC14.6□□□□□ -0.07
Col6a1Q04857 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
Col6a1Q04857 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Col6a1Q04857 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Col6a1Q04857 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Col6a1Q04857 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Gm24830-201ENSMUST00000102024 166 ntBASIC14.59□□□□□ -0.07
Col6a1Q04857 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC14.59□□□□□ -0.07
Col6a1Q04857 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC14.59□□□□□ -0.07
Col6a1Q04857 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Gm25890-201ENSMUST00000177643 165 ntBASIC14.59□□□□□ -0.07
Col6a1Q04857 Rnu1b2-201ENSMUST00000178073 165 ntBASIC14.59□□□□□ -0.07
Col6a1Q04857 Rnu1b1-201ENSMUST00000178250 165 ntBASIC14.59□□□□□ -0.07
Col6a1Q04857 Gm22614-201ENSMUST00000178300 165 ntBASIC14.59□□□□□ -0.07
Col6a1Q04857 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC14.59□□□□□ -0.07
Col6a1Q04857 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Morn2-202ENSMUST00000227729 656 ntBASIC14.59□□□□□ -0.07
Col6a1Q04857 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Gm16372-201ENSMUST00000073088 450 ntBASIC14.59□□□□□ -0.07
Col6a1Q04857 Gm22042-201ENSMUST00000082989 165 ntBASIC14.59□□□□□ -0.07
Col6a1Q04857 Gm26232-201ENSMUST00000083360 166 ntBASIC14.59□□□□□ -0.07
Col6a1Q04857 Gm24136-201ENSMUST00000083374 165 ntBASIC14.59□□□□□ -0.07
Col6a1Q04857 Rnu1b6-201ENSMUST00000083839 166 ntBASIC14.59□□□□□ -0.07
Col6a1Q04857 Gm26110-201ENSMUST00000083971 165 ntBASIC14.59□□□□□ -0.07
Col6a1Q04857 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC14.59□□□□□ -0.07
Col6a1Q04857 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC14.59□□□□□ -0.07
Col6a1Q04857 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a1Q04857 AC115735.4-201ENSMUST00000227460 1944 ntBASIC14.58□□□□□ -0.07
Col6a1Q04857 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Col6a1Q04857 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Col6a1Q04857 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Col6a1Q04857 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Col6a1Q04857 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Col6a1Q04857 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Col6a1Q04857 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 Gm12715-201ENSMUST00000121430 1128 ntBASIC14.58□□□□□ -0.08
Col6a1Q04857 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC14.58□□□□□ -0.08
Col6a1Q04857 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC14.58□□□□□ -0.08
Col6a1Q04857 Gm22334-201ENSMUST00000158070 133 ntBASIC14.58□□□□□ -0.08
Col6a1Q04857 Gm3890-201ENSMUST00000182416 207 ntBASIC14.58□□□□□ -0.08
Col6a1Q04857 Gm29237-201ENSMUST00000186216 448 ntTSL 5 BASIC14.58□□□□□ -0.08
Col6a1Q04857 Gm34767-201ENSMUST00000191813 1062 ntBASIC14.58□□□□□ -0.08
Col6a1Q04857 Gm42997-202ENSMUST00000200321 985 ntBASIC14.58□□□□□ -0.08
Col6a1Q04857 Gm43947-201ENSMUST00000203019 959 ntBASIC14.58□□□□□ -0.08
Col6a1Q04857 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
Col6a1Q04857 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC14.58□□□□□ -0.08
Col6a1Q04857 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC14.58□□□□□ -0.08
Col6a1Q04857 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 AC121801.1-201ENSMUST00000225363 1899 ntBASIC14.58□□□□□ -0.08
Col6a1Q04857 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC14.58□□□□□ -0.08
Col6a1Q04857 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC14.58□□□□□ -0.08
Col6a1Q04857 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a1Q04857 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col6a1Q04857 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col6a1Q04857 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col6a1Q04857 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col6a1Q04857 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 54.6 ms