Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cdh11P55288 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC12.08□□□□□ -0.48
Cdh11P55288 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC12.08□□□□□ -0.48
Cdh11P55288 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cdh11P55288 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cdh11P55288 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC12.08□□□□□ -0.48
Cdh11P55288 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cdh11P55288 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Cdh11P55288 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Cdh11P55288 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC12.07□□□□□ -0.48
Cdh11P55288 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC12.07□□□□□ -0.48
Cdh11P55288 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Cdh11P55288 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Cdh11P55288 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC12.07□□□□□ -0.48
Cdh11P55288 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
Cdh11P55288 Gm5385-201ENSMUST00000118988 1559 ntBASIC12.07□□□□□ -0.48
Cdh11P55288 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC12.07□□□□□ -0.48
Cdh11P55288 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC12.07□□□□□ -0.48
Cdh11P55288 Gm4782-201ENSMUST00000168705 2046 ntBASIC12.07□□□□□ -0.48
Cdh11P55288 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Ighv5-13-201ENSMUST00000193550 290 ntBASIC12.07□□□□□ -0.48
Cdh11P55288 Gm37917-201ENSMUST00000194711 392 ntBASIC12.07□□□□□ -0.48
Cdh11P55288 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC12.07□□□□□ -0.48
Cdh11P55288 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC12.07□□□□□ -0.48
Cdh11P55288 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Cdh11P55288 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Cdh11P55288 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Cdh11P55288 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Cdh11P55288 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC12.07□□□□□ -0.48
Cdh11P55288 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Cdh11P55288 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Cdh11P55288 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC12.06□□□□□ -0.48
Cdh11P55288 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Cdh11P55288 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Cdh11P55288 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC12.06□□□□□ -0.48
Cdh11P55288 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Cdh11P55288 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC12.06□□□□□ -0.48
Cdh11P55288 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC12.06□□□□□ -0.48
Cdh11P55288 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC12.06□□□□□ -0.48
Cdh11P55288 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC12.06□□□□□ -0.48
Cdh11P55288 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC12.06□□□□□ -0.48
Cdh11P55288 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC12.06□□□□□ -0.48
Cdh11P55288 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
Cdh11P55288 Gm23984-201ENSMUST00000157139 203 ntBASIC12.06□□□□□ -0.48
Cdh11P55288 Gm21854-201ENSMUST00000179901 471 ntBASIC12.06□□□□□ -0.48
Cdh11P55288 Gm31326-201ENSMUST00000191856 1048 ntBASIC12.06□□□□□ -0.48
Cdh11P55288 Gm10766-202ENSMUST00000194123 606 ntBASIC12.06□□□□□ -0.48
Cdh11P55288 AC153872.1-201ENSMUST00000199539 128 ntBASIC12.06□□□□□ -0.48
Cdh11P55288 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC12.06□□□□□ -0.48
Cdh11P55288 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC12.06□□□□□ -0.48
Cdh11P55288 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Gm42748-201ENSMUST00000199354 2341 ntBASIC12.06□□□□□ -0.48
Cdh11P55288 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Cdh11P55288 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Cdh11P55288 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Cdh11P55288 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms