Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Gm15276-201ENSMUST00000145953 498 ntBASIC14.81□□□□□ -0.04
Col2a1P28481 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Col2a1P28481 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Col2a1P28481 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC14.81□□□□□ -0.04
Col2a1P28481 Gm2383-201ENSMUST00000181461 807 ntBASIC14.81□□□□□ -0.04
Col2a1P28481 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col2a1P28481 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Col2a1P28481 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Col2a1P28481 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Col2a1P28481 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Col2a1P28481 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC14.8□□□□□ -0.04
Col2a1P28481 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 AC122314.1-201ENSMUST00000223056 2239 ntBASIC14.8□□□□□ -0.04
Col2a1P28481 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Col2a1P28481 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 Gm12314-201ENSMUST00000118104 538 ntBASIC14.8□□□□□ -0.04
Col2a1P28481 Gm13315-201ENSMUST00000120376 991 ntBASIC14.8□□□□□ -0.04
Col2a1P28481 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 Gm24845-201ENSMUST00000158034 109 ntBASIC14.8□□□□□ -0.04
Col2a1P28481 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC14.8□□□□□ -0.04
Col2a1P28481 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Col2a1P28481 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Col2a1P28481 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC14.8□□□□□ -0.04
Col2a1P28481 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
Col2a1P28481 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 CT025610.1-201ENSMUST00000224552 1786 ntBASIC14.8□□□□□ -0.04
Col2a1P28481 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14.8□□□□□ -0.04
Col2a1P28481 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Col2a1P28481 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Col2a1P28481 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Col2a1P28481 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Col2a1P28481 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
Col2a1P28481 Gm12715-201ENSMUST00000121430 1128 ntBASIC14.79□□□□□ -0.04
Col2a1P28481 Gm5863-201ENSMUST00000121760 1008 ntBASIC14.79□□□□□ -0.04
Col2a1P28481 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC14.79□□□□□ -0.04
Col2a1P28481 Gm5869-201ENSMUST00000200248 1257 ntBASIC14.79□□□□□ -0.04
Col2a1P28481 Gm45186-201ENSMUST00000206874 478 ntBASIC14.79□□□□□ -0.04
Col2a1P28481 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC14.79□□□□□ -0.04
Col2a1P28481 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC14.79□□□□□ -0.04
Col2a1P28481 Gm8712-201ENSMUST00000221090 701 ntBASIC14.79□□□□□ -0.04
Col2a1P28481 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Gm5939-201ENSMUST00000119613 2874 ntBASIC14.79□□□□□ -0.04
Col2a1P28481 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC14.79□□□□□ -0.04
Col2a1P28481 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Col2a1P28481 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Col2a1P28481 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Col2a1P28481 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Col2a1P28481 Gm2673-201ENSMUST00000120958 1608 ntBASIC14.79□□□□□ -0.04
Col2a1P28481 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col2a1P28481 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col2a1P28481 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms