Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
Cdx1P18111 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
Cdx1P18111 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Asb3-202ENSMUST00000117883 2509 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Gm13453-201ENSMUST00000118708 357 ntBASIC10.71□□□□□ -0.69
Cdx1P18111 Gm15593-201ENSMUST00000122085 1008 ntBASIC10.71□□□□□ -0.69
Cdx1P18111 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.69
Cdx1P18111 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
Cdx1P18111 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC10.71□□□□□ -0.69
Cdx1P18111 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
Cdx1P18111 Gm25144-201ENSMUST00000179561 110 ntBASIC10.71□□□□□ -0.69
Cdx1P18111 Gm25352-201ENSMUST00000179815 110 ntBASIC10.71□□□□□ -0.69
Cdx1P18111 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
Cdx1P18111 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Gm18049-201ENSMUST00000208909 581 ntBASIC10.71□□□□□ -0.69
Cdx1P18111 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC10.71□□□□□ -0.69
Cdx1P18111 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC10.71□□□□□ -0.69
Cdx1P18111 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC10.71□□□□□ -0.69
Cdx1P18111 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC10.71□□□□□ -0.69
Cdx1P18111 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
Cdx1P18111 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.7
Cdx1P18111 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.7
Cdx1P18111 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Cdx1P18111 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
Cdx1P18111 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Cdx1P18111 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.7
Cdx1P18111 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC10.7□□□□□ -0.7
Cdx1P18111 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC10.7□□□□□ -0.7
Cdx1P18111 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC10.7□□□□□ -0.7
Cdx1P18111 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
Cdx1P18111 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Zfand2a-202ENSMUST00000110851 3121 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC10.7□□□□□ -0.7
Cdx1P18111 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Gm13730-201ENSMUST00000121036 1462 ntBASIC10.7□□□□□ -0.7
Cdx1P18111 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC10.7□□□□□ -0.7
Cdx1P18111 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC10.7□□□□□ -0.7
Cdx1P18111 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC10.7□□□□□ -0.7
Cdx1P18111 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Src-201ENSMUST00000029175 3906 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
Cdx1P18111 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
Cdx1P18111 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
Cdx1P18111 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Gm8410-201ENSMUST00000117225 605 ntBASIC10.7□□□□□ -0.7
Cdx1P18111 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC10.7□□□□□ -0.7
Cdx1P18111 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC10.7□□□□□ -0.7
Cdx1P18111 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC10.7□□□□□ -0.7
Cdx1P18111 Gm27618-201ENSMUST00000183671 60 ntBASIC10.7□□□□□ -0.7
Cdx1P18111 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC10.7□□□□□ -0.7
Cdx1P18111 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
Cdx1P18111 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC10.7□□□□□ -0.7
Cdx1P18111 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Cdx1P18111 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms