Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.39
Msx1P13297 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC12.64□□□□□ -0.39
Msx1P13297 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
Msx1P13297 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC12.64□□□□□ -0.39
Msx1P13297 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Msx1P13297 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC12.64□□□□□ -0.39
Msx1P13297 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC12.64□□□□□ -0.39
Msx1P13297 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Gm23931-201ENSMUST00000103842 109 ntBASIC12.64□□□□□ -0.39
Msx1P13297 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Gm15171-201ENSMUST00000122191 334 ntBASIC12.64□□□□□ -0.39
Msx1P13297 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC12.64□□□□□ -0.39
Msx1P13297 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC12.64□□□□□ -0.39
Msx1P13297 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC12.64□□□□□ -0.39
Msx1P13297 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC12.64□□□□□ -0.39
Msx1P13297 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Msx1P13297 Gm27243-201ENSMUST00000183964 521 ntBASIC12.64□□□□□ -0.39
Msx1P13297 C730036E19Rik-201ENSMUST00000188305 1102 ntTSL 5 BASIC12.64□□□□□ -0.39
Msx1P13297 Gm21739-202ENSMUST00000188917 933 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Msx1P13297 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC12.64□□□□□ -0.39
Msx1P13297 Gm37002-201ENSMUST00000194560 373 ntBASIC12.64□□□□□ -0.39
Msx1P13297 Gm43818-201ENSMUST00000200605 466 ntBASIC12.64□□□□□ -0.39
Msx1P13297 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Msx1P13297 Ly96-201ENSMUST00000026881 632 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
Msx1P13297 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
Msx1P13297 Gm18244-201ENSMUST00000219747 1566 ntBASIC12.64□□□□□ -0.39
Msx1P13297 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Msx1P13297 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Msx1P13297 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Msx1P13297 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Gm14752-201ENSMUST00000120719 2075 ntBASIC12.63□□□□□ -0.39
Msx1P13297 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Msx1P13297 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Msx1P13297 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC12.63□□□□□ -0.39
Msx1P13297 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC12.63□□□□□ -0.39
Msx1P13297 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Msx1P13297 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC12.63□□□□□ -0.39
Msx1P13297 Gm14723-201ENSMUST00000118686 215 ntBASIC12.63□□□□□ -0.39
Msx1P13297 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
Msx1P13297 Gm13689-201ENSMUST00000119360 685 ntBASIC12.63□□□□□ -0.39
Msx1P13297 Gm15787-203ENSMUST00000130892 1250 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC12.63□□□□□ -0.39
Msx1P13297 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC12.63□□□□□ -0.39
Msx1P13297 Gm27772-201ENSMUST00000184900 187 ntBASIC12.63□□□□□ -0.39
Msx1P13297 Gm40263-201ENSMUST00000197468 580 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Cnot2-201ENSMUST00000020374 1059 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Gm18054-201ENSMUST00000207539 555 ntBASIC12.63□□□□□ -0.39
Msx1P13297 Tpt1-ps4-201ENSMUST00000210908 503 ntBASIC12.63□□□□□ -0.39
Msx1P13297 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Msx1P13297 Vmn1r192-201ENSMUST00000072632 1067 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Msx1P13297 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Msx1P13297 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC12.63□□□□□ -0.39
Msx1P13297 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Msx1P13297 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Msx1P13297 Gm8872-201ENSMUST00000197475 1341 ntBASIC12.62□□□□□ -0.39
Msx1P13297 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC12.62□□□□□ -0.39
Msx1P13297 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Msx1P13297 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Msx1P13297 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms