Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Gm12403-201ENSMUST00000121384 959 ntBASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Gm10359-201ENSMUST00000180167 1002 ntBASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Gm12033-201ENSMUST00000180654 1002 ntBASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Gm5559-201ENSMUST00000180755 1002 ntBASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Gm4335-201ENSMUST00000182581 1004 ntBASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Gm27772-201ENSMUST00000184900 187 ntBASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Gm37171-201ENSMUST00000192636 1185 ntBASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Gm10728-201ENSMUST00000194292 1829 ntBASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Pcdh1F7BJK1 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Gm37015-201ENSMUST00000192763 1521 ntBASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Gm18905-201ENSMUST00000205454 928 ntBASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Pcdh1F7BJK1 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Gm9279-201ENSMUST00000223175 1606 ntBASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Gm3436-201ENSMUST00000179930 840 ntBASIC11.9□□□□□ -0.5
Pcdh1F7BJK1 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms