Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trim54Q9ERP3 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Gm14608-201ENSMUST00000120030 1553 ntBASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 AC096628.2-201ENSMUST00000225443 1413 ntBASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Gm12329-201ENSMUST00000120829 1007 ntBASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Gm43133-201ENSMUST00000197472 463 ntBASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Gm43822-201ENSMUST00000200285 476 ntBASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Gm9257-201ENSMUST00000221254 232 ntBASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Ntrk2-208ENSMUST00000225583 2719 ntBASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Trim54Q9ERP3 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim54Q9ERP3 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Trim54Q9ERP3 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim54Q9ERP3 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim54Q9ERP3 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Trim54Q9ERP3 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
Trim54Q9ERP3 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trim54Q9ERP3 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Gm42872-201ENSMUST00000200026 1967 ntBASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Gm2231-201ENSMUST00000125661 612 ntBASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Gm6222-202ENSMUST00000182143 629 ntBASIC14.33□□□□□ -0.12
Trim54Q9ERP3 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Gm42627-201ENSMUST00000197347 224 ntBASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trim54Q9ERP3 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Trim54Q9ERP3 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms