Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Gm27731-201ENSMUST00000185192 107 ntBASIC15.61■□□□□ 0.09
Trim56Q80VI1 Gm28693-202ENSMUST00000190758 331 ntBASIC15.61■□□□□ 0.09
Trim56Q80VI1 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Gm40466-201ENSMUST00000212174 422 ntBASIC15.61■□□□□ 0.09
Trim56Q80VI1 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 AC134254.1-201ENSMUST00000221362 167 ntBASIC15.61■□□□□ 0.09
Trim56Q80VI1 AC140451.2-201ENSMUST00000228030 664 ntBASIC15.61■□□□□ 0.09
Trim56Q80VI1 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim56Q80VI1 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Gm42928-201ENSMUST00000197338 3339 ntBASIC15.6■□□□□ 0.09
Trim56Q80VI1 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Gm6198-201ENSMUST00000191337 2929 ntBASIC15.6■□□□□ 0.09
Trim56Q80VI1 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC15.6■□□□□ 0.09
Trim56Q80VI1 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC15.6■□□□□ 0.09
Trim56Q80VI1 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC15.6■□□□□ 0.09
Trim56Q80VI1 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Gm45784-201ENSMUST00000188360 142 ntBASIC15.6■□□□□ 0.09
Trim56Q80VI1 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trim56Q80VI1 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim56Q80VI1 AC131068.2-201ENSMUST00000226175 1453 ntBASIC15.59■□□□□ 0.09
Trim56Q80VI1 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Ntrk2-209ENSMUST00000225950 2640 ntBASIC15.59■□□□□ 0.09
Trim56Q80VI1 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC15.59■□□□□ 0.09
Trim56Q80VI1 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Gm18062-201ENSMUST00000208020 547 ntBASIC15.59■□□□□ 0.09
Trim56Q80VI1 Gm18055-201ENSMUST00000208254 547 ntBASIC15.59■□□□□ 0.09
Trim56Q80VI1 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC15.59■□□□□ 0.09
Trim56Q80VI1 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim56Q80VI1 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.09
Trim56Q80VI1 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Trim56Q80VI1 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
Trim56Q80VI1 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Trim56Q80VI1 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC15.58■□□□□ 0.09
Trim56Q80VI1 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
Trim56Q80VI1 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
Trim56Q80VI1 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trim56Q80VI1 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 47.5 ms