Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim28Q62318 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Trim28Q62318 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim28Q62318 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim28Q62318 Gm44094-201ENSMUST00000204703 2030 ntBASIC17.08■□□□□ 0.32
Trim28Q62318 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC17.08■□□□□ 0.32
Trim28Q62318 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Trim28Q62318 Daam2-202ENSMUST00000224595 1926 ntBASIC17.08■□□□□ 0.32
Trim28Q62318 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Trim28Q62318 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC17.07■□□□□ 0.32
Trim28Q62318 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Trim28Q62318 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC17.07■□□□□ 0.32
Trim28Q62318 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
Trim28Q62318 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC17.07■□□□□ 0.32
Trim28Q62318 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC17.07■□□□□ 0.32
Trim28Q62318 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Trim28Q62318 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Trim28Q62318 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Gm16296-201ENSMUST00000159905 325 ntBASIC17.07■□□□□ 0.32
Trim28Q62318 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Trim28Q62318 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC17.07■□□□□ 0.32
Trim28Q62318 Gm23363-201ENSMUST00000175024 79 ntBASIC17.07■□□□□ 0.32
Trim28Q62318 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC17.07■□□□□ 0.32
Trim28Q62318 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC17.07■□□□□ 0.32
Trim28Q62318 Gm38241-201ENSMUST00000192641 898 ntBASIC17.07■□□□□ 0.32
Trim28Q62318 CT025533.2-201ENSMUST00000228715 1248 ntBASIC17.07■□□□□ 0.32
Trim28Q62318 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Trim28Q62318 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim28Q62318 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Trim28Q62318 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim28Q62318 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim28Q62318 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Trim28Q62318 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC17.06■□□□□ 0.32
Trim28Q62318 Gm14921-201ENSMUST00000118643 908 ntBASIC17.06■□□□□ 0.32
Trim28Q62318 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim28Q62318 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Trim28Q62318 Gm44364-201ENSMUST00000198368 141 ntBASIC17.06■□□□□ 0.32
Trim28Q62318 Gm7118-201ENSMUST00000200167 1003 ntBASIC17.06■□□□□ 0.32
Trim28Q62318 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim28Q62318 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC17.06■□□□□ 0.32
Trim28Q62318 AC132317.1-201ENSMUST00000227227 962 ntBASIC17.06■□□□□ 0.32
Trim28Q62318 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim28Q62318 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim28Q62318 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim28Q62318 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim28Q62318 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim28Q62318 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Trim28Q62318 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
Trim28Q62318 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim28Q62318 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim28Q62318 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim28Q62318 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Trim28Q62318 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim28Q62318 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim28Q62318 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim28Q62318 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trim28Q62318 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim28Q62318 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim28Q62318 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC17.05■□□□□ 0.32
Trim28Q62318 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trim28Q62318 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim28Q62318 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC17.05■□□□□ 0.32
Trim28Q62318 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC17.05■□□□□ 0.32
Trim28Q62318 Mir339-201ENSMUST00000083659 96 ntBASIC17.05■□□□□ 0.32
Trim28Q62318 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim28Q62318 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim28Q62318 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim28Q62318 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim28Q62318 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim28Q62318 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim28Q62318 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Trim28Q62318 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim28Q62318 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim28Q62318 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim28Q62318 Gm8908-201ENSMUST00000121633 1024 ntBASIC17.04■□□□□ 0.32
Trim28Q62318 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 76.3 ms