Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC15.61■□□□□ 0.09
Limch1Q3UH68 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC15.61■□□□□ 0.09
Limch1Q3UH68 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Ikzf4-201ENSMUST00000133342 5150 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Gm2495-201ENSMUST00000191160 466 ntBASIC15.61■□□□□ 0.09
Limch1Q3UH68 Gm19078-201ENSMUST00000206311 727 ntBASIC15.61■□□□□ 0.09
Limch1Q3UH68 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Gm5939-201ENSMUST00000119613 2874 ntBASIC15.61■□□□□ 0.09
Limch1Q3UH68 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Limch1Q3UH68 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Gm12742-201ENSMUST00000117326 410 ntBASIC15.6■□□□□ 0.09
Limch1Q3UH68 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC15.6■□□□□ 0.09
Limch1Q3UH68 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC15.6■□□□□ 0.09
Limch1Q3UH68 AC110817.1-201ENSMUST00000225706 605 ntBASIC15.6■□□□□ 0.09
Limch1Q3UH68 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Gm37861-201ENSMUST00000193534 2869 ntBASIC15.6■□□□□ 0.09
Limch1Q3UH68 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Limch1Q3UH68 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Mir874-201ENSMUST00000104769 76 ntBASIC15.59■□□□□ 0.09
Limch1Q3UH68 Gm11524-201ENSMUST00000119349 807 ntBASIC15.59■□□□□ 0.09
Limch1Q3UH68 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Gm26464-201ENSMUST00000157094 305 ntBASIC15.59■□□□□ 0.09
Limch1Q3UH68 Gm8835-201ENSMUST00000173096 1169 ntBASIC15.59■□□□□ 0.09
Limch1Q3UH68 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 AC125117.1-201ENSMUST00000228121 468 ntBASIC15.59■□□□□ 0.09
Limch1Q3UH68 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Limch1Q3UH68 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Limch1Q3UH68 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Limch1Q3UH68 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Limch1Q3UH68 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 59.8 ms