Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC11.32□□□□□ -0.6
Col8a1Q00780 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC11.32□□□□□ -0.6
Col8a1Q00780 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Col8a1Q00780 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col8a1Q00780 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC11.31□□□□□ -0.6
Col8a1Q00780 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Col8a1Q00780 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Gm10040-201ENSMUST00000080726 1662 ntBASIC11.31□□□□□ -0.6
Col8a1Q00780 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Gm14028-201ENSMUST00000117434 479 ntBASIC11.31□□□□□ -0.6
Col8a1Q00780 Gm11439-201ENSMUST00000118598 409 ntBASIC11.31□□□□□ -0.6
Col8a1Q00780 Gm12217-201ENSMUST00000118858 696 ntBASIC11.31□□□□□ -0.6
Col8a1Q00780 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC11.31□□□□□ -0.6
Col8a1Q00780 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC11.31□□□□□ -0.6
Col8a1Q00780 Gm34767-201ENSMUST00000191813 1062 ntBASIC11.31□□□□□ -0.6
Col8a1Q00780 Gm29741-201ENSMUST00000192667 421 ntBASIC11.31□□□□□ -0.6
Col8a1Q00780 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Gm17870-201ENSMUST00000219489 1174 ntBASIC11.31□□□□□ -0.6
Col8a1Q00780 Morn2-202ENSMUST00000227729 656 ntBASIC11.31□□□□□ -0.6
Col8a1Q00780 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Col8a1Q00780 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Col8a1Q00780 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col8a1Q00780 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Gm9856-201ENSMUST00000217077 2578 ntBASIC11.3□□□□□ -0.6
Col8a1Q00780 Gm15544-201ENSMUST00000118776 1531 ntBASIC11.3□□□□□ -0.6
Col8a1Q00780 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC11.3□□□□□ -0.6
Col8a1Q00780 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC11.3□□□□□ -0.6
Col8a1Q00780 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Col8a1Q00780 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC11.3□□□□□ -0.6
Col8a1Q00780 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
Col8a1Q00780 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Gm3890-201ENSMUST00000182416 207 ntBASIC11.3□□□□□ -0.6
Col8a1Q00780 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC11.3□□□□□ -0.6
Col8a1Q00780 Mir6927-201ENSMUST00000184494 71 ntBASIC11.3□□□□□ -0.6
Col8a1Q00780 Gm9678-201ENSMUST00000198979 1149 ntBASIC11.3□□□□□ -0.6
Col8a1Q00780 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
Col8a1Q00780 Gm8959-201ENSMUST00000213150 571 ntBASIC11.3□□□□□ -0.6
Col8a1Q00780 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC11.3□□□□□ -0.6
Col8a1Q00780 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC11.3□□□□□ -0.6
Col8a1Q00780 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Col8a1Q00780 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Col8a1Q00780 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Col8a1Q00780 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Col8a1Q00780 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Col8a1Q00780 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col8a1Q00780 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col8a1Q00780 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Col8a1Q00780 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC11.29□□□□□ -0.6
Col8a1Q00780 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Col8a1Q00780 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms