Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col18a1P39061 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col18a1P39061 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col18a1P39061 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col18a1P39061 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col18a1P39061 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col18a1P39061 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Col18a1P39061 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col18a1P39061 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col18a1P39061 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col18a1P39061 AC154184.3-201ENSMUST00000225620 1090 ntBASIC17.11■□□□□ 0.33
Col18a1P39061 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Col18a1P39061 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col18a1P39061 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Col18a1P39061 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Col18a1P39061 Gm4782-201ENSMUST00000168705 2046 ntBASIC17.1■□□□□ 0.33
Col18a1P39061 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col18a1P39061 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col18a1P39061 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC17.1■□□□□ 0.33
Col18a1P39061 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col18a1P39061 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col18a1P39061 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col18a1P39061 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col18a1P39061 Gm9129-201ENSMUST00000218173 1689 ntBASIC17.1■□□□□ 0.33
Col18a1P39061 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
Col18a1P39061 Gm7541-201ENSMUST00000118361 535 ntBASIC17.1■□□□□ 0.33
Col18a1P39061 Gm18159-201ENSMUST00000174516 1070 ntBASIC17.1■□□□□ 0.33
Col18a1P39061 Ighv4-2-201ENSMUST00000192975 362 ntBASIC17.1■□□□□ 0.33
Col18a1P39061 Gm37458-201ENSMUST00000194055 410 ntBASIC17.1■□□□□ 0.33
Col18a1P39061 Gm2965-201ENSMUST00000198365 343 ntBASIC17.1■□□□□ 0.33
Col18a1P39061 AC166341.2-201ENSMUST00000220571 120 ntBASIC17.1■□□□□ 0.33
Col18a1P39061 Rpl15-201ENSMUST00000079419 883 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Col18a1P39061 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col18a1P39061 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Col18a1P39061 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Col18a1P39061 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Col18a1P39061 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Col18a1P39061 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col18a1P39061 Gm9072-201ENSMUST00000218390 1514 ntBASIC17.1■□□□□ 0.33
Col18a1P39061 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col18a1P39061 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col18a1P39061 Gm42518-201ENSMUST00000196277 938 ntBASIC17.1■□□□□ 0.33
Col18a1P39061 Cinp-204ENSMUST00000221102 536 ntTSL 2 BASIC17.1■□□□□ 0.33
Col18a1P39061 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col18a1P39061 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col18a1P39061 Gm10288-201ENSMUST00000084614 537 ntBASIC17.1■□□□□ 0.33
Col18a1P39061 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col18a1P39061 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Col18a1P39061 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col18a1P39061 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC17.09■□□□□ 0.33
Col18a1P39061 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col18a1P39061 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col18a1P39061 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col18a1P39061 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col18a1P39061 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Col18a1P39061 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col18a1P39061 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col18a1P39061 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col18a1P39061 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC17.09■□□□□ 0.33
Col18a1P39061 Park2-204ENSMUST00000179624 1108 ntTSL 5 BASIC17.09■□□□□ 0.33
Col18a1P39061 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC17.09■□□□□ 0.33
Col18a1P39061 Gm8343-201ENSMUST00000182705 994 ntBASIC17.09■□□□□ 0.33
Col18a1P39061 Ighv1-48-201ENSMUST00000191795 294 ntBASIC17.09■□□□□ 0.33
Col18a1P39061 Gm44158-201ENSMUST00000203881 505 ntBASIC17.09■□□□□ 0.33
Col18a1P39061 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col18a1P39061 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
Col18a1P39061 AC154725.1-201ENSMUST00000224826 1961 ntBASIC17.09■□□□□ 0.33
Col18a1P39061 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col18a1P39061 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col18a1P39061 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col18a1P39061 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Col18a1P39061 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col18a1P39061 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col18a1P39061 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC17.08■□□□□ 0.33
Col18a1P39061 Dnajb6-212ENSMUST00000198694 505 ntTSL 3 BASIC17.08■□□□□ 0.33
Col18a1P39061 AC151275.1-201ENSMUST00000224870 585 ntBASIC17.08■□□□□ 0.33
Col18a1P39061 AC156501.1-201ENSMUST00000228219 270 ntBASIC17.08■□□□□ 0.33
Col18a1P39061 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
Col18a1P39061 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
Col18a1P39061 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC17.08■□□□□ 0.32
Col18a1P39061 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col18a1P39061 Gm13384-201ENSMUST00000117166 1344 ntBASIC17.08■□□□□ 0.32
Col18a1P39061 Sln-201ENSMUST00000048485 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col18a1P39061 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col18a1P39061 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col18a1P39061 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col18a1P39061 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col18a1P39061 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col18a1P39061 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Col18a1P39061 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col18a1P39061 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
Col18a1P39061 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Col18a1P39061 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col18a1P39061 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Col18a1P39061 Gm24934-201ENSMUST00000103764 111 ntBASIC17.07■□□□□ 0.32
Col18a1P39061 Gm12857-201ENSMUST00000117678 592 ntBASIC17.07■□□□□ 0.32
Col18a1P39061 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col18a1P39061 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col18a1P39061 Gm29292-201ENSMUST00000186169 766 ntTSL 3 BASIC17.07■□□□□ 0.32
Col18a1P39061 Gm43184-201ENSMUST00000197247 542 ntBASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms