Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Sdc1P18828 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
Sdc1P18828 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Sdc1P18828 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Sdc1P18828 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Sdc1P18828 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC10.82□□□□□ -0.68
Sdc1P18828 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC10.82□□□□□ -0.68
Sdc1P18828 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC10.82□□□□□ -0.68
Sdc1P18828 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Sdc1P18828 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Sdc1P18828 Gm7230-201ENSMUST00000173026 815 ntBASIC10.82□□□□□ -0.68
Sdc1P18828 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC10.82□□□□□ -0.68
Sdc1P18828 Thap2-203ENSMUST00000218989 527 ntBASIC10.82□□□□□ -0.68
Sdc1P18828 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Sdc1P18828 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
Sdc1P18828 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Sdc1P18828 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Sdc1P18828 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Sdc1P18828 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC10.82□□□□□ -0.68
Sdc1P18828 BC001981-202ENSMUST00000191393 1545 ntBASIC10.82□□□□□ -0.68
Sdc1P18828 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Sdc1P18828 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Sdc1P18828 Gm45053-201ENSMUST00000206112 2499 ntBASIC10.82□□□□□ -0.68
Sdc1P18828 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Sdc1P18828 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Sdc1P18828 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC10.82□□□□□ -0.68
Sdc1P18828 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Sdc1P18828 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Sdc1P18828 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Sdc1P18828 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC10.82□□□□□ -0.68
Sdc1P18828 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Sdc1P18828 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC10.81□□□□□ -0.68
Sdc1P18828 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Sdc1P18828 Gm44086-201ENSMUST00000203251 2349 ntBASIC10.81□□□□□ -0.68
Sdc1P18828 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Sdc1P18828 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Sdc1P18828 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Sdc1P18828 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC10.81□□□□□ -0.68
Sdc1P18828 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Gm43075-201ENSMUST00000198613 3905 ntBASIC10.81□□□□□ -0.68
Sdc1P18828 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC10.81□□□□□ -0.68
Sdc1P18828 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC10.81□□□□□ -0.68
Sdc1P18828 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Gm27300-201ENSMUST00000184085 97 ntBASIC10.81□□□□□ -0.68
Sdc1P18828 Gm27335-201ENSMUST00000184758 97 ntBASIC10.81□□□□□ -0.68
Sdc1P18828 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC10.81□□□□□ -0.68
Sdc1P18828 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC10.81□□□□□ -0.68
Sdc1P18828 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Mir497b-201ENSMUST00000093601 125 ntBASIC10.81□□□□□ -0.68
Sdc1P18828 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Sdc1P18828 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
Sdc1P18828 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Sdc1P18828 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Sdc1P18828 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Sdc1P18828 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Sdc1P18828 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC10.8□□□□□ -0.68
Sdc1P18828 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms