Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Cdx1P18111 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC10.73□□□□□ -0.69
Cdx1P18111 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Gm6415-201ENSMUST00000118488 348 ntBASIC10.73□□□□□ -0.69
Cdx1P18111 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC10.73□□□□□ -0.69
Cdx1P18111 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Gm27306-201ENSMUST00000183970 107 ntBASIC10.73□□□□□ -0.69
Cdx1P18111 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC10.73□□□□□ -0.69
Cdx1P18111 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC10.73□□□□□ -0.69
Cdx1P18111 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC10.73□□□□□ -0.69
Cdx1P18111 CT025535.1-201ENSMUST00000227172 491 ntBASIC10.73□□□□□ -0.69
Cdx1P18111 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC10.73□□□□□ -0.69
Cdx1P18111 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Cdx1P18111 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC10.73□□□□□ -0.69
Cdx1P18111 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Cdx1P18111 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Gm8096-201ENSMUST00000209921 1591 ntBASIC10.73□□□□□ -0.69
Cdx1P18111 Syt7-205ENSMUST00000224135 1557 ntBASIC10.73□□□□□ -0.69
Cdx1P18111 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC10.73□□□□□ -0.69
Cdx1P18111 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
Cdx1P18111 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 CT009757.3-201ENSMUST00000223367 2320 ntBASIC10.72□□□□□ -0.69
Cdx1P18111 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
Cdx1P18111 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
Cdx1P18111 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
Cdx1P18111 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
Cdx1P18111 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
Cdx1P18111 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Gm12428-201ENSMUST00000119844 727 ntBASIC10.72□□□□□ -0.69
Cdx1P18111 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC10.72□□□□□ -0.69
Cdx1P18111 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC10.72□□□□□ -0.69
Cdx1P18111 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC10.72□□□□□ -0.69
Cdx1P18111 Gm27437-201ENSMUST00000183429 107 ntBASIC10.72□□□□□ -0.69
Cdx1P18111 Mir8102-201ENSMUST00000184148 139 ntBASIC10.72□□□□□ -0.69
Cdx1P18111 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Gm5626-201ENSMUST00000222151 1058 ntBASIC10.72□□□□□ -0.69
Cdx1P18111 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC10.72□□□□□ -0.69
Cdx1P18111 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
Cdx1P18111 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Gm13233-201ENSMUST00000118760 1443 ntBASIC10.72□□□□□ -0.69
Cdx1P18111 Gm13244-201ENSMUST00000118855 1446 ntBASIC10.72□□□□□ -0.69
Cdx1P18111 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC10.72□□□□□ -0.69
Cdx1P18111 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Cdx1P18111 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Cdx1P18111 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC10.71□□□□□ -0.69
Cdx1P18111 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Cdx1P18111 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms