Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Chd3B1AR17 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Chd3B1AR17 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Chd3B1AR17 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Chd3B1AR17 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Chd3B1AR17 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Chd3B1AR17 Gm37912-201ENSMUST00000191895 3076 ntBASIC12.96□□□□□ -0.33
Chd3B1AR17 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Chd3B1AR17 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC12.96□□□□□ -0.33
Chd3B1AR17 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Chd3B1AR17 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
Chd3B1AR17 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Chd3B1AR17 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Chd3B1AR17 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Chd3B1AR17 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Chd3B1AR17 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Chd3B1AR17 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC12.96□□□□□ -0.33
Chd3B1AR17 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Chd3B1AR17 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Chd3B1AR17 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Chd3B1AR17 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Chd3B1AR17 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Chd3B1AR17 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC12.96□□□□□ -0.33
Chd3B1AR17 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Chd3B1AR17 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Chd3B1AR17 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Chd3B1AR17 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Chd3B1AR17 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Chd3B1AR17 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Chd3B1AR17 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Chd3B1AR17 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Chd3B1AR17 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC12.95□□□□□ -0.34
Chd3B1AR17 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC12.95□□□□□ -0.34
Chd3B1AR17 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
Chd3B1AR17 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC12.95□□□□□ -0.34
Chd3B1AR17 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC12.95□□□□□ -0.34
Chd3B1AR17 Gm25261-201ENSMUST00000157416 134 ntBASIC12.95□□□□□ -0.34
Chd3B1AR17 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Gm17823-201ENSMUST00000217830 1006 ntBASIC12.95□□□□□ -0.34
Chd3B1AR17 Gm10268-201ENSMUST00000085340 555 ntBASIC12.95□□□□□ -0.34
Chd3B1AR17 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Gm45242-201ENSMUST00000210666 2129 ntBASIC12.95□□□□□ -0.34
Chd3B1AR17 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC12.95□□□□□ -0.34
Chd3B1AR17 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Chd3B1AR17 Gm6222-202ENSMUST00000182143 629 ntBASIC12.95□□□□□ -0.34
Chd3B1AR17 Gm27516-201ENSMUST00000184237 98 ntBASIC12.95□□□□□ -0.34
Chd3B1AR17 Gm42627-201ENSMUST00000197347 224 ntBASIC12.95□□□□□ -0.34
Chd3B1AR17 Gm43758-201ENSMUST00000199500 367 ntBASIC12.95□□□□□ -0.34
Chd3B1AR17 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC12.95□□□□□ -0.34
Chd3B1AR17 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC12.95□□□□□ -0.34
Chd3B1AR17 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Chd3B1AR17 Gm12846-201ENSMUST00000120431 1373 ntBASIC12.95□□□□□ -0.34
Chd3B1AR17 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Chd3B1AR17 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Chd3B1AR17 Gm11661-201ENSMUST00000121761 1327 ntBASIC12.94□□□□□ -0.34
Chd3B1AR17 Gm11405-201ENSMUST00000118689 1556 ntBASIC12.94□□□□□ -0.34
Chd3B1AR17 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Chd3B1AR17 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Chd3B1AR17 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Chd3B1AR17 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Chd3B1AR17 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Chd3B1AR17 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC12.94□□□□□ -0.34
Chd3B1AR17 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC12.94□□□□□ -0.34
Chd3B1AR17 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC12.94□□□□□ -0.34
Chd3B1AR17 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Chd3B1AR17 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Chd3B1AR17 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Chd3B1AR17 Gm44443-201ENSMUST00000204396 5633 ntBASIC12.94□□□□□ -0.34
Chd3B1AR17 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Chd3B1AR17 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Chd3B1AR17 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Chd3B1AR17 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Chd3B1AR17 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Chd3B1AR17 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC12.94□□□□□ -0.34
Chd3B1AR17 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC12.94□□□□□ -0.34
Chd3B1AR17 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Chd3B1AR17 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 67.5 ms