Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Scn11aQ9R053 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Scn11aQ9R053 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Scn11aQ9R053 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC15.47■□□□□ 0.07
Scn11aQ9R053 Gm13394-201ENSMUST00000121658 1000 ntBASIC15.47■□□□□ 0.07
Scn11aQ9R053 Gm43378-201ENSMUST00000199336 582 ntBASIC15.47■□□□□ 0.07
Scn11aQ9R053 Gm19963-201ENSMUST00000208413 1255 ntBASIC15.47■□□□□ 0.07
Scn11aQ9R053 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC15.47■□□□□ 0.07
Scn11aQ9R053 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Scn11aQ9R053 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Scn11aQ9R053 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Scn11aQ9R053 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Scn11aQ9R053 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC15.47■□□□□ 0.07
Scn11aQ9R053 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Scn11aQ9R053 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Scn11aQ9R053 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Scn11aQ9R053 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Scn11aQ9R053 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Scn11aQ9R053 Gm14109-201ENSMUST00000118814 309 ntBASIC15.47■□□□□ 0.07
Scn11aQ9R053 Gm12208-201ENSMUST00000122004 163 ntBASIC15.47■□□□□ 0.07
Scn11aQ9R053 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Scn11aQ9R053 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Scn11aQ9R053 Gm6992-201ENSMUST00000217973 1607 ntBASIC15.47■□□□□ 0.07
Scn11aQ9R053 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Scn11aQ9R053 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Gm8862-201ENSMUST00000198379 1346 ntBASIC15.46■□□□□ 0.07
Scn11aQ9R053 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Gm13813-201ENSMUST00000120998 787 ntBASIC15.46■□□□□ 0.07
Scn11aQ9R053 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Gm27023-201ENSMUST00000182372 285 ntBASIC15.46■□□□□ 0.07
Scn11aQ9R053 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Gm5869-201ENSMUST00000200248 1257 ntBASIC15.46■□□□□ 0.07
Scn11aQ9R053 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC15.46■□□□□ 0.07
Scn11aQ9R053 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Scn11aQ9R053 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.06
Scn11aQ9R053 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
Scn11aQ9R053 Gm43823-201ENSMUST00000197391 1808 ntBASIC15.46■□□□□ 0.06
Scn11aQ9R053 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC15.46■□□□□ 0.06
Scn11aQ9R053 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC15.46■□□□□ 0.06
Scn11aQ9R053 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.06
Scn11aQ9R053 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 n-R5s14-201ENSMUST00000122688 107 ntBASIC15.45■□□□□ 0.06
Scn11aQ9R053 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Gm44545-201ENSMUST00000208262 746 ntBASIC15.45■□□□□ 0.06
Scn11aQ9R053 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Sst-201ENSMUST00000004480 599 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Scn11aQ9R053 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC15.44■□□□□ 0.06
Scn11aQ9R053 AC123857.2-201ENSMUST00000225756 1582 ntBASIC15.44■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 49.3 ms