Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Ddx56Q9D0R4 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Gm10040-201ENSMUST00000080726 1662 ntBASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Gm7446-201ENSMUST00000221035 1240 ntBASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Gm12500-202ENSMUST00000186471 2428 ntBASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ddx56Q9D0R4 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC13.96□□□□□ -0.18
Ddx56Q9D0R4 Gm43364-201ENSMUST00000196046 3274 ntBASIC13.96□□□□□ -0.18
Ddx56Q9D0R4 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Ddx56Q9D0R4 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Ddx56Q9D0R4 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
Ddx56Q9D0R4 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Ddx56Q9D0R4 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
Ddx56Q9D0R4 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Ddx56Q9D0R4 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Gm6447-201ENSMUST00000118905 835 ntBASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 D030068K23Rik-201ENSMUST00000180382 2617 ntTSL 2 BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ddx56Q9D0R4 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Ddx56Q9D0R4 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Ddx56Q9D0R4 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ddx56Q9D0R4 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ddx56Q9D0R4 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ddx56Q9D0R4 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ddx56Q9D0R4 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Ddx56Q9D0R4 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Ddx56Q9D0R4 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ddx56Q9D0R4 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Ddx56Q9D0R4 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Ddx56Q9D0R4 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Ddx56Q9D0R4 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ddx56Q9D0R4 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms